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MMseqs2 Release 1-c7a89
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@martin-steinegger martin-steinegger released this 29 Oct 10:04
· 2866 commits to master since this release
1-c7a89
c7a89b6

Changes since vNatBiotech Release

New Features

  • Taxonomy classification workflow with robust 2bLCA computation and fast LCA computation in O(N LogN)
  • Support reading .bz2 archives for createdb
  • Createdb can turn multiple fasta files into one database now
  • Extend prefilter score range to improve order of best hits after prefiltering.
  • Automatically split input sequence set based on system RAM in kmermatcher. Linclust can now run with less memory.

Performance Regressions Fixed

  • Fixed underperforming iterative-sequence-profile search without a precomputed index table

Breaking Command Line Interface Changes

  • Iterative-non-profile-search --sens-step-size changed to --sens-steps (Number of Iterations) (Does not break nested workflows anymore)

Others

  • Query coverage mode (--cov-mode 2) for searching
  • Clustering is now the same between single and multi threaded version
  • Bug fixes in rescorediagonal
  • Speedup of kmermatcher
  • Speedup and memory reduction of swapresults
  • Many usability improvements

Devlopers

  • MMseqs2 can now be included in framework mode to subprojects
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