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Custom template issue #644
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This is an issue with Google Colab breaking in Safari. We can't really do much about it. I recommend to use Firefox. |
Okay! Will try Firefox in the morning.
Thanks,
Yuan
On Aug 21, 2024, at 1:40 AM, Milot Mirdita ***@***.***> wrote:
This is an issue with Google Colab breaking in Safari. We can't really do much about it. I recommend to use Firefox.
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Expected Behavior
Trying to predict a structure based on a known PDB structure. After I followed what has been suggested to create cif file on previously reported issue, error message came up "MessageError: RangeError: Maximum call stack size exceeded."
Current Behavior
MessageError: RangeError: Maximum call stack size exceeded after upload edited cif files according to the instruction listed in 2022.
Steps to Reproduce (for bugs)
1n3x.cif(n/a) - 296501 bytes, last modified: n/a - 0% done
MessageError Traceback (most recent call last)
in <cell line: 51>()
55 custom_template_path = os.path.join(jobname,f"template")
56 os.makedirs(custom_template_path, exist_ok=True)
---> 57 uploaded = files.upload()
58 use_templates = True
59 for fn in uploaded.keys():
3 frames
/usr/local/lib/python3.10/dist-packages/google/colab/_message.py in read_reply_from_input(message_id, timeout_sec)
101 ):
102 if 'error' in reply:
--> 103 raise MessageError(reply['error'])
104 return reply.get('data', None)
105
MessageError: RangeError: Maximum call stack size exceeded.
ColabFold Output (for bugs)
1n3x.cif(n/a) - 296501 bytes, last modified: n/a - 0% done
MessageError Traceback (most recent call last)
in <cell line: 51>()
55 custom_template_path = os.path.join(jobname,f"template")
56 os.makedirs(custom_template_path, exist_ok=True)
---> 57 uploaded = files.upload()
58 use_templates = True
59 for fn in uploaded.keys():
3 frames
/usr/local/lib/python3.10/dist-packages/google/colab/_message.py in read_reply_from_input(message_id, timeout_sec)
101 ):
102 if 'error' in reply:
--> 103 raise MessageError(reply['error'])
104 return reply.get('data', None)
105
MessageError: RangeError: Maximum call stack size exceeded.
Context
Tried different pdb files and converted them to
Your Environment
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