Nightly Notebook Execution #234
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name: Nightly Notebook Execution | |
on: | |
schedule: | |
- cron: '0 3 * * *' # run at 2 AM UTC | |
env: | |
ARCH_ON_CI: "normal" | |
IS_CRON: "true" | |
WEBBPSF_PATH: $HOME/data/webbpsf-data | |
PYSYN_CDBS: $PWD/grp/redcat/trds/ | |
jobs: | |
gather-notebooks: | |
runs-on: ubuntu-latest | |
outputs: | |
matrix: ${{ steps.set-matrix.outputs.matrix }} | |
steps: | |
- uses: actions/checkout@v2 | |
- id: set-matrix | |
run: echo "::set-output name=matrix::$(find notebooks -name "*.ipynb" | jq -cnR '[inputs | select(length>0)]')" | |
nightly-notebook-execution: | |
needs: gather-notebooks | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
notebooks: ${{ fromJson(needs.gather-notebooks.outputs.matrix) }} | |
steps: | |
- uses: actions/checkout@v2 | |
#- run: | | |
# pip install -r ${${{ matrix.notebooks }}%/*}/requirements.txt | |
- uses: actions/checkout@v2 | |
- name: Set up Python 3.8.12 | |
uses: actions/setup-python@v2 ## needed for caching | |
with: | |
python-version: 3.8.12 | |
cache: 'pip' | |
- name: Add conda to system path | |
run: | | |
# $CONDA is an environment variable pointing to the root of the miniconda directory | |
echo $CONDA/bin >> $GITHUB_PATH | |
- name: Install dependencies | |
run: | | |
#conda env update --file CIenvironment.yml --name base | |
pip install -r requirements.txt | |
pip install pytest | |
pip install nbval | |
pip install nbconvert | |
- name: Execute notebooks | |
run: | | |
jupyter nbconvert --template classic --to html --execute "${{ matrix.notebooks }}" | |
#- name: Validate notebooks | |
# run: | | |
# pytest --nbval "${{ matrix.notebooks }}" |