Nightly Notebook Execution #247

	name: Nightly Notebook Execution
	on:
	schedule:
	- cron: '0 3 * * *' # run at 2 AM UTC

	env:
	ARCH_ON_CI: "normal"
	IS_CRON: "true"
	WEBBPSF_PATH: $HOME/data/webbpsf-data
	PYSYN_CDBS: $PWD/grp/redcat/trds/

	jobs:
	gather-notebooks:
	runs-on: ubuntu-latest
	outputs:
	matrix: ${{ steps.set-matrix.outputs.matrix }}
	steps:
	- uses: actions/checkout@v2
	- id: set-matrix
	run: echo "::set-output name=matrix::$(find notebooks -name "*.ipynb" \| jq -cnR '[inputs \| select(length>0)]')"
	nightly-notebook-execution:
	needs: gather-notebooks
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	notebooks: ${{ fromJson(needs.gather-notebooks.outputs.matrix) }}
	steps:
	- uses: actions/checkout@v2
	#- run: \|
	# pip install -r ${${{ matrix.notebooks }}%/*}/requirements.txt
	- uses: actions/checkout@v2
	- name: Set up Python 3.8.12
	uses: actions/setup-python@v2 ## needed for caching
	with:
	python-version: 3.8.12
	cache: 'pip'
	- name: Add conda to system path
	run: \|
	# $CONDA is an environment variable pointing to the root of the miniconda directory
	echo $CONDA/bin >> $GITHUB_PATH
	- name: Install dependencies
	run: \|
	#conda env update --file CIenvironment.yml --name base
	pip install -r requirements.txt
	pip install pytest
	pip install nbval
	pip install nbconvert
	- name: Execute notebooks
	run: \|
	jupyter nbconvert --template classic --to html --execute "${{ matrix.notebooks }}"
	#- name: Validate notebooks
	# run: \|
	# pytest --nbval "${{ matrix.notebooks }}"

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