remove pytest and sphinx from environment
#125
Workflow file for this run
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| name: tests | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: micromamba-shell {0} | |
| env: | |
| CRDS_PATH: /tmp/crds_cache | |
| CRDS_CLIENT_RETRY_COUNT: 3 | |
| CRDS_CLIENT_RETRY_DELAY_SECONDS: 20 | |
| PYSYN_CDBS: /tmp/trds | |
| LD_LIBRARY_PATH: /usr/local/lib | |
| jobs: | |
| build: | |
| uses: ./.github/workflows/build.yaml | |
| unit_tests_via_tox: | |
| needs: [ build ] | |
| strategy: | |
| matrix: | |
| package: [ acstools, asdf, calcos, ccdproc, costools, synphot, jwst ] | |
| # the macOS 13 runner is on Intel hardware | |
| runs-on: [ ubuntu-latest, macos-13, macos-latest ] | |
| python-version: [ '3.10', '3.11', '3.12' ] | |
| include: | |
| - package: acstools | |
| repository: spacetelescope/acstools | |
| default_factors: test-alldeps | |
| args: --remote-data -v | |
| - package: asdf | |
| repository: asdf-format/asdf | |
| default_factors: parallel | |
| - package: calcos | |
| repository: spacetelescope/calcos | |
| default_factors: xdist | |
| - package: ccdproc | |
| repository: astropy/ccdproc | |
| default_factors: alldeps | |
| - package: costools | |
| repository: spacetelescope/costools | |
| default_factors: test-xdist | |
| - package: synphot | |
| repository: spacetelescope/synphot_refactor | |
| default_factors: test-alldeps | |
| args: --remote-data | |
| - package: jwst | |
| repository: spacetelescope/jwst | |
| default_factors: xdist | |
| args: --slow -k "not test_cmdline_status" | |
| env: | |
| CRDS_SERVER_URL: https://jwst-crds.stsci.edu | |
| exclude: | |
| - runs-on: macos-13 | |
| python-version: '3.10' | |
| - runs-on: macos-13 | |
| python-version: '3.11' | |
| - runs-on: macos-latest | |
| python-version: '3.10' | |
| - runs-on: macos-latest | |
| python-version: '3.11' | |
| fail-fast: false | |
| runs-on: ${{ matrix.runs-on }} | |
| name: ${{ matrix.package }} (Python ${{ matrix.python-version }}, tox ${{ matrix.default_factors }}${{ matrix.args != '' && ' -- ' || '' }}${{ matrix.args }}, ${{ matrix.runs-on }}) | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: stenv | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: ${{ matrix.package }} | |
| repository: ${{ matrix.repository }} | |
| ref: ${{ steps.package_version.outputs.version }} | |
| fetch-depth: 0 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: stenv-${{ runner.os }}-py${{ matrix.python-version }} | |
| environment-file: stenv/environment.yaml | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| cache-downloads: true | |
| cache-downloads-key: downloads-${{ needs.build.outputs.date }} | |
| cache-environment: true | |
| cache-environment-key: environment-${{ needs.build.outputs.date }} | |
| init-shell: none | |
| generate-run-shell: true | |
| - run: echo "version=$(pip list | awk '$1 == "${{ matrix.package }}" {print $2}')" >> $GITHUB_OUTPUT | |
| id: package_version | |
| # TODO: figure out a better way to use package version when checking out a Git ref | |
| - run: micromamba install tox | |
| - run: | | |
| micromamba env export --no-build | grep -v "name:" | grep -v "prefix:" | |
| pip freeze | |
| - if: matrix.env.CRDS_SERVER_URL != '' | |
| run: echo "context=$(crds list --operational-context)" >> $GITHUB_OUTPUT | |
| id: crds-context | |
| env: | |
| CRDS_SERVER_URL: ${{ matrix.env.CRDS_SERVER_URL }} | |
| - if: steps.crds-context.outputs.context != '' | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.CRDS_PATH }} | |
| key: crds-${{ matrix.package }}-${{ steps.crds-context.outputs.context }} | |
| - name: parse tox factor | |
| uses: actions/github-script@v7 | |
| id: python-factor | |
| with: | |
| script: | | |
| core.setOutput('factor', 'py${{ matrix.python-version }}'.replaceAll(/[/.]/g, '')); | |
| - run: tox -e ${{ steps.python-factor.outputs.factor }}${{ matrix.default_factors != '' && '-' || '' }}${{ matrix.default_factors }}${{ matrix.args != '' && ' -- ' || '' }}${{ matrix.args }} | |
| working-directory: ${{ matrix.package }} | |
| env: | |
| CRDS_SERVER_URL: ${{ matrix.env.CRDS_SERVER_URL }} | |
| unit_tests_via_package: | |
| needs: [ build ] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| package: [ reftools, wfpc2tools ] | |
| # the macOS 13 runner is on Intel hardware | |
| runs-on: [ ubuntu-latest, macos-13, macos-latest ] | |
| python-version: [ '3.10', '3.11', '3.12' ] | |
| include: | |
| #- package: pysynphot | |
| # extras: [ test ] | |
| - package: reftools | |
| extras: [ test ] | |
| - package: wfpc2tools | |
| exclude: | |
| - runs-on: macos-13 | |
| python-version: '3.10' | |
| - runs-on: macos-13 | |
| python-version: '3.11' | |
| - runs-on: macos-latest | |
| python-version: '3.10' | |
| - runs-on: macos-latest | |
| python-version: '3.11' | |
| runs-on: ${{ matrix.runs-on }} | |
| name: ${{ matrix.package }} (Python ${{ matrix.python-version }}, ${{ matrix.runs-on }}) | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: stenv-${{ runner.os }}-py${{ matrix.python-version }} | |
| environment-file: environment.yaml | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| cache-downloads: true | |
| cache-downloads-key: downloads-${{ needs.build.outputs.date }} | |
| cache-environment: true | |
| cache-environment-key: environment-${{ needs.build.outputs.date }} | |
| init-shell: none | |
| generate-run-shell: true | |
| - if: matrix.extras != '' | |
| run: pip install "${{ matrix.package }}[${{ join(matrix.extras, ',') }}]" | |
| - run: pip install pytest-xdist | |
| - run: | | |
| micromamba env export --no-build | grep -v "name:" | grep -v "prefix:" | |
| pip freeze | |
| - if: matrix.env.CRDS_SERVER_URL != '' | |
| run: echo "context=$(crds list --operational-context)" >> $GITHUB_OUTPUT | |
| id: crds-context | |
| env: | |
| CRDS_SERVER_URL: ${{ matrix.env.CRDS_SERVER_URL }} | |
| - if: steps.crds-context.outputs.context != '' | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.CRDS_PATH }} | |
| key: crds-${{ matrix.package }}-${{ steps.crds-context.outputs.context }} | |
| - run: pytest -n auto ${{ matrix.args }} --pyargs ${{ matrix.package }} | |
| env: | |
| CRDS_SERVER_URL: ${{ matrix.env.CRDS_SERVER_URL }} | |
| unit_tests_from_source: | |
| needs: [ build ] | |
| strategy: | |
| matrix: | |
| package: [ hstcal ] | |
| # the macOS 13 runner is on Intel hardware | |
| runs-on: [ ubuntu-latest, macos-13, macos-latest ] | |
| python-version: [ '3.10', '3.11', '3.12' ] | |
| include: | |
| #- package: drizzlepac | |
| # repository: spacetelescope/drizzlepac | |
| # extras: [ test ] | |
| - package: hstcal | |
| repository: spacetelescope/hstcal | |
| dependencies: crds ci_watson pytest pytest-xdist | |
| args: --slow | |
| test_directory: tests | |
| env: | |
| CRDS_SERVER_URL: https://hst-crds.stsci.edu | |
| #- package: stistools | |
| # repository: spacetelescope/stistools | |
| # - package: stsynphot | |
| # repository: spacetelescope/stsynphot_refactor | |
| # extras: [ test ] | |
| exclude: | |
| - runs-on: macos-13 | |
| python-version: '3.10' | |
| - runs-on: macos-13 | |
| python-version: '3.11' | |
| - runs-on: macos-latest | |
| python-version: '3.10' | |
| - runs-on: macos-latest | |
| python-version: '3.11' | |
| fail-fast: false | |
| runs-on: ${{ matrix.runs-on }} | |
| name: ${{ matrix.package }} (Python ${{ matrix.python-version }}, ${{ matrix.runs-on }}) | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: stenv | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: stenv-${{ runner.os }}-py${{ matrix.python-version }} | |
| environment-file: stenv/environment.yaml | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| cache-downloads: true | |
| cache-downloads-key: downloads-${{ needs.build.outputs.date }} | |
| cache-environment: true | |
| cache-environment-key: environment-${{ needs.build.outputs.date }} | |
| init-shell: none | |
| generate-run-shell: true | |
| - run: echo "version=$(pip list | awk '$1 == "${{ matrix.package }}" {print $2}')" >> $GITHUB_OUTPUT | |
| id: package_version | |
| # TODO: figure out a better way to use package version when checking out a Git ref | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: ${{ matrix.package }} | |
| repository: ${{ matrix.repository }} | |
| ref: ${{ steps.package_version.outputs.version }} | |
| fetch-depth: 0 | |
| - if: matrix.extras != '' | |
| run: pip install -e ".[${{ join(matrix.extras, ',') }}]" | |
| working-directory: ${{ matrix.package }} | |
| - if: matrix.dependencies != '' | |
| run: pip install ${{ matrix.dependencies }} | |
| - run: | | |
| micromamba env export --no-build | grep -v "name:" | grep -v "prefix:" | |
| pip freeze | |
| - if: matrix.env.CRDS_SERVER_URL != '' | |
| run: echo "context=$(crds list --operational-context)" >> $GITHUB_OUTPUT | |
| id: crds-context | |
| env: | |
| CRDS_SERVER_URL: ${{ matrix.env.CRDS_SERVER_URL }} | |
| - if: steps.crds-context.outputs.context != '' | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.CRDS_PATH }} | |
| key: crds-${{ matrix.package }}-${{ steps.crds-context.outputs.context }} | |
| - if: matrix.pre_command != '' | |
| run: ${{ matrix.pre_command }} | |
| working-directory: ${{ matrix.package }} | |
| - run: pytest -n auto ${{ matrix.args }} ${{ matrix.test_directory }} | |
| env: | |
| CRDS_SERVER_URL: ${{ matrix.env.CRDS_SERVER_URL }} | |
| working-directory: ${{ matrix.package }} | |
| crds_test_cache: | |
| uses: spacetelescope/crds/.github/workflows/cache.yml@master | |
| crds_tests: | |
| needs: [ build, crds_test_cache ] | |
| env: | |
| CRDS_PATH: /tmp/crds-cache-default-test | |
| CRDS_TEST_ROOT: /tmp | |
| CRDS_TESTING_CACHE: /tmp/crds-cache-test | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| package: [ crds ] | |
| # the macOS 13 runner is on Intel hardware | |
| runs-on: [ ubuntu-latest, macos-13, macos-latest ] | |
| python-version: [ '3.10', '3.11', '3.12' ] | |
| include: | |
| - package: crds | |
| repository: spacetelescope/crds | |
| exclude: | |
| - runs-on: macos-13 | |
| python-version: '3.10' | |
| - runs-on: macos-13 | |
| python-version: '3.11' | |
| - runs-on: macos-latest | |
| python-version: '3.10' | |
| - runs-on: macos-latest | |
| python-version: '3.11' | |
| runs-on: ${{ matrix.runs-on }} | |
| name: ${{ matrix.package }} (Python ${{ matrix.python-version }}, ${{ matrix.runs-on }}) | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: stenv | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: stenv-${{ runner.os }}-py${{ matrix.python-version }} | |
| environment-file: stenv/environment.yaml | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| cache-downloads: true | |
| cache-downloads-key: downloads-${{ needs.build.outputs.date }} | |
| cache-environment: true | |
| cache-environment-key: environment-${{ needs.build.outputs.date }} | |
| init-shell: none | |
| generate-run-shell: true | |
| - run: micromamba install -y filelock requests | |
| - run: pip install parsely roman-datamodels git+https://github.com/spacetelescope/jwst | |
| - run: | | |
| micromamba env export --no-build | grep -v "name:" | grep -v "prefix:" | |
| pip freeze | |
| - run: echo "version=$(pip list | awk '$1 == "${{ matrix.package }}" {print $2}')" >> $GITHUB_OUTPUT | |
| id: package_version | |
| # TODO: figure out a better way to use package version when checking out a Git ref | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: ${{ matrix.package }} | |
| repository: ${{ matrix.repository }} | |
| ref: ${{ steps.package_version.outputs.version }} | |
| fetch-depth: 0 | |
| - run: pip uninstall --yes crds && ./install && pip install .[submission,test,docs,synphot] | |
| working-directory: ${{ matrix.package }} | |
| - id: cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ${{ needs.crds_test_cache.outputs.path }} | |
| ${{ needs.crds_test_cache.outputs.testing_cache }} | |
| key: ${{ needs.crds_test_cache.outputs.key }} | |
| - run: ./runtests --cover | |
| working-directory: ${{ matrix.package }} | |
| env: | |
| CRDS_SERVER_URL: https://hst-crds.stsci.edu | |
| smoke_tests: | |
| needs: [ build ] | |
| strategy: | |
| matrix: | |
| package: [ calcos, drizzlepac ] | |
| # the macOS 13 runner is on Intel hardware | |
| runs-on: [ ubuntu-latest, macos-13, macos-latest ] | |
| python-version: [ '3.10', '3.11', '3.12' ] | |
| include: | |
| - package: calcos | |
| run: calcos la8n01qkq_rawtag_a.fits | |
| env: | |
| CRDS_SERVER_URL: https://hst-crds.stsci.edu | |
| jref: hst/references/hst/ | |
| - package: drizzlepac | |
| run: pytest -n auto tests/test_drizzlepac.py | |
| env: | |
| CRDS_SERVER_URL: https://hst-crds.stsci.edu | |
| jref: hst/references/hst/ | |
| exclude: | |
| - runs-on: macos-13 | |
| python-version: '3.10' | |
| - runs-on: macos-13 | |
| python-version: '3.11' | |
| - runs-on: macos-latest | |
| python-version: '3.10' | |
| - runs-on: macos-latest | |
| python-version: '3.11' | |
| fail-fast: false | |
| runs-on: ${{ matrix.runs-on }} | |
| name: ${{ matrix.package }} (Python ${{ matrix.python-version }}, ${{ matrix.runs-on }}) | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| lfs: true | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: stenv-${{ runner.os }}-py${{ matrix.python-version }} | |
| environment-file: environment.yaml | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| cache-downloads: true | |
| cache-downloads-key: downloads-${{ needs.build.outputs.date }} | |
| cache-environment: true | |
| cache-environment-key: environment-${{ needs.build.outputs.date }} | |
| init-shell: none | |
| generate-run-shell: true | |
| - if: matrix.extras != '' | |
| run: pip install ".[${{ join(matrix.extras, ',') }}]" | |
| - run: pip install pytest-xdist | |
| - run: | | |
| micromamba env export --no-build | grep -v "name:" | grep -v "prefix:" | |
| pip freeze | |
| - if: matrix.env.CRDS_SERVER_URL != '' | |
| run: echo "context=$(crds list --operational-context)" >> $GITHUB_OUTPUT | |
| id: crds-context | |
| env: | |
| CRDS_SERVER_URL: ${{ matrix.env.CRDS_SERVER_URL }} | |
| - if: steps.crds-context.outputs.context != '' | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.CRDS_PATH }} | |
| key: crds-${{ matrix.package }}-${{ steps.crds-context.outputs.context }} | |
| - uses: actions/cache@v4 | |
| with: | |
| path: tests/data/ | |
| key: data-${{ hashFiles('tests/data/*') }} | |
| - run: ${{ matrix.run }} | |
| env: | |
| CRDS_SERVER_URL: ${{ matrix.env.CRDS_SERVER_URL }} | |
| jref: ${{ env.CRDS_PATH }}/${{ matrix.env.jref }} |