Installation issue: regenie (missing 64bit lapack) #2745
Description
Steps to reproduce the issue
Simple spack install regenie triggers a whole hoist of linker errors related to lapack (the _64 suffix).
Here is the specs:
[spackadmin@nfs-spack ~]$ spack spec -l regenie
- 6t3v2lx regenie@4.1~bgen-bundled-deps~bundled-cxxopts~bundled-eigen~bundled-lbfgspp~ipo~static+with-boostio+with-htslib build_system=cmake build_type=
Release generator=make patches:=1522673 arch=linux-rhel9-x86_64_v2 %c,cxx,fortran=gcc@14.3.0
[+] esp3ue5 ^bgen@1.1.7~bundled-deps~full-source+headers+libs build_system=waf patches:=558a77a arch=linux-rhel9-x86_64_v2 %c,cxx=gcc@14.3.0
[+] 3nlyu5q ^fossil@2.18 build_system=autotools arch=linux-rhel9-x86_64_v2 %c,cxx=gcc@14.3.0
[+] xsgptvg ^boost@1.77.0+atomic+chrono~clanglibcpp~container~context~contract~coroutine+date_time~debug+exception~fiber+filesystem+graph~graph_parallel+icu+iostreams~json+locale+log+math~mpi+multithreaded~nowide~numpy~pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded~sta
cktrace+system~taggedlayout+test+thread+timer~type_erasure~url~versionedlayout+wave build_system=generic cxxstd=17 patches:=4849671,a440f96,b8569d7 visibili
ty=hidden arch=linux-rhel9-x86_64
[+] ojs3ici ^gcc-runtime@14.2.0 build_system=generic arch=linux-rhel9-x86_64
[+] tykyubw ^icu4c@74.2 build_system=autotools cxxstd=17 arch=linux-rhel9-x86_64 [+] mytbkzi ^autoconf@2.72 build_system=autotools arch=linux-rhel9-x86_64
[+] ediyz7b ^automake@1.16.5 build_system=autotools arch=linux-rhel9-x86_64
[+] g5zqcmk ^python@3.9.19+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter
+uuid+zlib build_system=generic patches:=0d98e93,4c24573,ebdca64,f2fd060 arch=linux-rhel9-x86_64
[+] otedrnq ^libxcrypt@4.4.35~obsolete_api build_system=autotools patches:=4885da3 arch=linux-rhel9-x86_64
[+] fjbx6tx ^openssl@3.4.0~docs+shared build_system=generic certs=mozilla arch=linux-rhel9-x86_64 [+] q3qghh3 ^ca-certificates-mozilla@2023-05-30 build_system=generic arch=linux-rhel9-x86_64
[+] rvqsg3a ^sqlite@3.46.0+column_metadata+dynamic_extensions+fts~functions+rtree build_system=autotools arch=linux-rhel9-x86_64
[+] 6o5fbrs ^util-linux-uuid@2.40.2 build_system=autotools arch=linux-rhel9-x86_64
[+] maltsdt ^xz@5.4.6~pic build_system=autotools libs:=shared,static arch=linux-rhel9-x86_64
[+] rvlvqxx ^bzip2@1.0.8~debug~pic+shared build_system=generic arch=linux-rhel9-x86_64
[+] hwvg6po ^diffutils@3.10 build_system=autotools arch=linux-rhel9-x86_64
[+] zgpulce ^gcc-runtime@11.4.1 build_system=generic arch=linux-rhel9-x86_64
[e] pdpia3h ^glibc@2.34 build_system=autotools arch=linux-rhel9-x86_64
[+] mxqgfw5 ^cmake@3.30.5~doc+ncurses+ownlibs~qtgui build_system=generic build_type=Release patches:=dbc3892 arch=linux-rhel9-x86_64
[+] il3bofi ^curl@8.10.1~gssapi~ldap~libidn2~librtmp~libssh~libssh2+nghttp2 build_system=autotools libs:=shared,static tls:=openssl arch=linux-rhe
l9-x86_64
[+] lamcu7g ^nghttp2@1.63.0 build_system=autotools arch=linux-rhel9-x86_64
[+] 5edr7zo ^pkgconf@2.2.0 build_system=autotools arch=linux-rhel9-x86_64
[+] afpe6py ^ncurses@6.5~symlinks+termlib abi=none build_system=autotools patches:=7a351bc arch=linux-rhel9-x86_64
[+] sj7jixg ^compiler-wrapper@1.0 build_system=generic arch=linux-rhel9-x86_64_v2 [+] 7ippftm ^cxxopts@3.3.1~ipo~unicode build_system=cmake build_type=Release generator=make arch=linux-rhel9-x86_64_v2 %cxx=gcc@11.4.1
[e] rvqnts3 ^cmake@3.26.5~doc+ncurses+ownlibs~qtgui build_system=generic build_type=Release patches:=dbc3892,fdea723 arch=linux-rhel9-x86_64_v2
[e] t7ud456 ^gcc@11.4.1~binutils+bootstrap~graphite~nvptx~piclibs~profiled~strip build_system=autotools build_type=RelWithDebInfo languages:='c,c+
+,fortran' arch=linux-rhel9-x86_64_v2
[+] v7kewl6 ^gcc-runtime@11.4.1 build_system=generic arch=linux-rhel9-x86_64_v2
[e] rmo2ams ^gmake@4.3~guile build_system=generic patches:=599f134 arch=linux-rhel9-x86_64_v2
[+] ib3pypg ^eigen@3.4.0~ipo~nightly~rocm build_system=cmake build_type=RelWithDebInfo generator=make arch=linux-rhel9-x86_64_v2 %c,cxx=gcc@11.4.1
[-] rkfxhau ^cmake@3.31.8~doc+ncurses+ownlibs~qtgui build_system=generic build_type=Release arch=linux-rhel9-x86_64_v2 %c,cxx=gcc@11.4.1
[+] 2zieoo7 ^curl@8.11.1~gssapi~ldap~libidn2~librtmp~libssh~libssh2+nghttp2 build_system=autotools libs:=shared,static tls:=openssl arch=linux
-rhel9-x86_64_v2 %c,cxx=gcc@11.4.1
[+] lkv44gc ^nghttp2@1.65.0 build_system=autotools arch=linux-rhel9-x86_64_v2 %c,cxx=gcc@11.4.1
[-] 3ovyqky ^diffutils@3.10 build_system=autotools arch=linux-rhel9-x86_64_v2 %c=gcc@11.4.1
[+] ajyots3 ^libiconv@1.18 build_system=autotools libs:=shared,static arch=linux-rhel9-x86_64_v2 %c=gcc@11.4.1
[+] afhcnu2 ^openssl@3.4.1~docs+shared build_system=generic certs=mozilla arch=linux-rhel9-x86_64_v2 %c,cxx=gcc@11.4.1
[-] 3y2ymm7 ^ca-certificates-mozilla@2025-05-20 build_system=generic arch=linux-rhel9-x86_64_v2
[+] oscvcn3 ^ncurses@6.5~symlinks+termlib abi=none build_system=autotools patches:=7a351bc arch=linux-rhel9-x86_64_v2 %c,cxx=gcc@11.4.1
[-] 2i7bcsl ^compiler-wrapper@1.0 build_system=generic arch=linux-rhel9-x86_64_v2
[e] uqqzptx ^gcc@11.4.1~binutils+bootstrap~graphite~nvptx~piclibs~profiled~strip build_system=autotools build_type=RelWithDebInfo languages:='c,c+
+,fortran' arch=linux-rhel9-x86_64_v2
[+] 5zzqbzw ^gcc-runtime@11.4.1 build_system=generic arch=linux-rhel9-x86_64_v2
[-] cromgfx ^gmake@4.4.1~guile build_system=generic arch=linux-rhel9-x86_64_v2 %c=gcc@11.4.1
[+] ezm55ut ^gcc@14.3.0+binutils+bootstrap~graphite~mold~nvptx~piclibs~profiled~strip build_system=autotools build_type=RelWithDebInfo languages:='c,c
++,fortran' arch=linux-rhel9-x86_64 %c,cxx=clang@17.0.6
[+] ncbmob4 ^binutils@2.44~debuginfod+gas~gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_se
ctions=zlib libs:=shared,static arch=linux-rhel9-x86_64 %c,cxx=clang@17.0.6
[-] eiyisjk ^compiler-wrapper@1.0 build_system=generic arch=linux-rhel9-sapphirerapids
[+] j7mptzm ^gawk@5.3.1~nls build_system=autotools arch=linux-rhel9-x86_64
[+] cu7aana ^libsigsegv@2.14 build_system=autotools arch=linux-rhel9-x86_64
[+] jdcmdgw ^gmp@6.3.0+cxx build_system=autotools libs:=shared,static arch=linux-rhel9-x86_64
[+] ckziuro ^m4@1.4.19+sigsegv build_system=autotools patches:=9dc5fbd,bfdffa7 arch=linux-rhel9-x86_64
[+] yp7mgad ^libtool@2.4.7 build_system=autotools arch=linux-rhel9-x86_64
[+] nanxnwm ^findutils@4.9.0 build_system=autotools patches:=440b954 arch=linux-rhel9-x86_64
[+] 4tdthsj ^llvm@17.0.6+clang~cuda~flang+gold~ipo+libomptarget~libomptarget_debug~link_llvm_dylib+lld+lldb+llvm_dylib+lua~mlir+polly~python~split
_dwarf~z3~zstd build_system=cmake build_type=Release compiler-rt=runtime generator=ninja libcxx=runtime libunwind=runtime openmp=runtime shlib_symbol_versio
n=none targets:=all version_suffix=none arch=linux-rhel9-x86_64
[+] xskoq3l ^binutils@2.43.1~gas+gold~gprofng+headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_section
s=zlib libs:=shared,static arch=linux-rhel9-x86_64
[+] 7eqwyio ^hwloc@2.11.1~cairo~cuda~gl~libudev+libxml2~nvml~oneapi-level-zero~opencl+pci~rocm build_system=autotools libs:=shared,static arch
=linux-rhel9-x86_64
[+] y2s3j7p ^libpciaccess@0.17 build_system=autotools arch=linux-rhel9-x86_64
[+] 3qc3ntb ^util-macros@1.20.1 build_system=autotools arch=linux-rhel9-x86_64
[+] 5gdegvo ^libedit@3.1-20240808 build_system=autotools arch=linux-rhel9-x86_64
[+] z6h6lye ^libffi@3.4.6 build_system=autotools arch=linux-rhel9-x86_64
[+] ioxf5nu ^libxml2@2.13.4+pic~python+shared build_system=autotools arch=linux-rhel9-x86_64
[+] xifqfag ^lua@5.3.6+shared build_system=makefile fetcher=curl arch=linux-rhel9-x86_64
[+] vlldn6s ^unzip@6.0 build_system=makefile patches:=881d2ed,f6f6236 arch=linux-rhel9-x86_64
[+] xgueodv ^ninja@1.12.1+re2c build_system=generic arch=linux-rhel9-x86_64
[+] uvdcuym ^re2c@3.1 build_system=autotools arch=linux-rhel9-x86_64
[+] vjdufcl ^perl-data-dumper@2.173 build_system=perl arch=linux-rhel9-x86_64
[+] ahcjsid ^python@3.11.9+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix+tki
nter+uuid+zlib build_system=generic patches:=b0615b2,ebdca64,f2fd060 arch=linux-rhel9-x86_64[+] ry36jqm ^tcl@8.6.12 build_system=autotools arch=linux-rhel9-x86_64
[+] gqwbv5x ^tk@8.6.11+xft+xss build_system=autotools arch=linux-rhel9-x86_64
[+] ognvtny ^libx11@1.8.10 build_system=autotools arch=linux-rhel9-x86_64
[+] 3l24tyc ^inputproto@2.3.2 build_system=autotools arch=linux-rhel9-x86_64
[+] go3r3r5 ^kbproto@1.0.7 build_system=autotools arch=linux-rhel9-x86_64
[+] zepuqrb ^libxcb@1.17.0 build_system=autotools arch=linux-rhel9-x86_64
[+] y3mmezm ^libpthread-stubs@0.5 build_system=autotools arch=linux-rhel9-x86_64
[+] rfrcg3q ^libxau@1.0.11 build_system=autotools arch=linux-rhel9-x86_64
[+] lmqj2yq ^libxdmcp@1.1.5 build_system=autotools arch=linux-rhel9-x86_64
[+] dmhb2bo ^python@3.13.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+s
sl~tkinter+uuid+zlib build_system=generic arch=linux-rhel9-x86_64
[+] sjk36iz ^xcb-proto@1.17.0 build_system=autotools arch=linux-rhel9-x86_64
[+] ddfxe7c ^python-venv@1.0 build_system=generic arch=linux-rhel9-x86_64
[+] bdg5por ^xextproto@7.3.0 build_system=autotools arch=linux-rhel9-x86_64
[+] cfybdyc ^xproto@7.0.31 build_system=autotools arch=linux-rhel9-x86_64
[+] ua6jcb3 ^xtrans@1.5.2 build_system=autotools arch=linux-rhel9-x86_64
[+] 7idotwx ^libxft@2.3.8 build_system=autotools arch=linux-rhel9-x86_64
[+] gjrqcep ^fontconfig@2.15.0~pic build_system=autotools arch=linux-rhel9-x86_64
[+] kkobqfq ^font-util@1.4.1 build_system=autotools fonts:=encodings,font-adobe-100dpi,font-adobe-75dpi,font-adobe-utopia-100d
pi,font-adobe-utopia-75dpi,font-adobe-utopia-type1,font-alias,font-arabic-misc,font-bh-100dpi,font-bh-75dpi,font-bh-lucidatypewriter-100dpi,font-bh-lucidaty
pewriter-75dpi,font-bh-type1,font-bitstream-100dpi,font-bitstream-75dpi,font-bitstream-speedo,font-bitstream-type1,font-cronyx-cyrillic,font-cursor-misc,fon
t-daewoo-misc,font-dec-misc,font-ibm-type1,font-isas-misc,font-jis-misc,font-micro-misc,font-misc-cyrillic,font-misc-ethiopic,font-misc-meltho,font-misc-mis
c,font-mutt-misc,font-schumacher-misc,font-screen-cyrillic,font-sun-misc,font-winitzki-cyrillic,font-xfree86-type1 arch=linux-rhel9-x86_64
[+] 77c2wy2 ^bdftopcf@1.1.1 build_system=autotools arch=linux-rhel9-x86_64
[+] wu67t5m ^fontsproto@2.1.3 build_system=autotools arch=linux-rhel9-x86_64
[+] e2bv33h ^libxfont@1.5.4 build_system=autotools arch=linux-rhel9-x86_64
[+] n5whxrr ^mkfontdir@1.0.7 build_system=autotools arch=linux-rhel9-x86_64
[+] ktbybpl ^mkfontscale@1.2.3 build_system=autotools arch=linux-rhel9-x86_64
[+] pu25o7s ^libfontenc@1.1.8 build_system=autotools arch=linux-rhel9-x86_64
[+] grjt4p5 ^gperf@3.1 build_system=autotools patches:=3dd36db arch=linux-rhel9-x86_64
[+] epmuqik ^freetype@2.13.2+pic+shared build_system=autotools arch=linux-rhel9-x86_64
[+] mb73in5 ^libpng@1.6.39~ipo~pic build_system=cmake build_type=Release generator=make libs:=shared,static arch=linux-rhel9-x
86_64
[+] ack7mn3 ^libxrender@0.9.11 build_system=autotools arch=linux-rhel9-x86_64
[+] w6u3gos ^renderproto@0.11.1 build_system=autotools arch=linux-rhel9-x86_64
[+] 4k65q6x ^libxscrnsaver@1.2.4 build_system=autotools arch=linux-rhel9-x86_64
[+] napo7mn ^libxext@1.3.6 build_system=autotools arch=linux-rhel9-x86_64
[+] ysqz6ni ^scrnsaverproto@1.2.2 build_system=autotools arch=linux-rhel9-x86_64
[+] zvdjy5l ^swig@4.1.1 build_system=autotools arch=linux-rhel9-x86_64
[+] slk6aww ^pcre2@10.44~jit+multibyte build_system=autotools arch=linux-rhel9-x86_64
[+] kcg7tmr ^mpc@1.3.1 build_system=autotools libs:=shared,static arch=linux-rhel9-x86_64
[+] i77pfnw ^mpfr@4.2.1 build_system=autotools libs:=shared,static arch=linux-rhel9-x86_64
[+] pwi5kul ^autoconf-archive@2023.02.20 build_system=autotools arch=linux-rhel9-x86_64
[+] mbaxaiw ^perl@5.40.0+cpanm+opcode+open+shared+threads build_system=generic arch=linux-rhel9-x86_64
+] kvg6u4e ^berkeley-db@18.1.40+cxx~docs+stl build_system=autotools patches:=26090f4,b231fcc arch=linux-rhel9-x86_64
[+] iqfdyma ^texinfo@7.1 build_system=autotools arch=linux-rhel9-x86_64
[+] d2lbbjl ^gcc-runtime@14.3.0 build_system=generic arch=linux-rhel9-x86_64_v2
[e] p3mo2gr ^glibc@2.34 build_system=autotools arch=linux-rhel9-x86_64
[+] hndzowd ^gmake@4.4.1~guile build_system=generic arch=linux-rhel9-x86_64
[+] p2vc4ib ^htslib@1.22.1+gcs+libcurl+libdeflate+pic~plugins+s3 build_system=autotools arch=linux-rhel9-x86_64_v2 %c,cxx=gcc@14.3.0
[+] r6a272h ^lbfgspp@0.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel9-x86_64_v2 %cxx=gcc@14.3.0
[+] rub5qb3 ^cmake@3.30.5~doc+ncurses+ownlibs~qtgui build_system=generic build_type=Release patches:=dbc3892 arch=linux-rhel9-x86_64
[+] 6tpctdc ^libdeflate@1.18~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel9-x86_64
[+] e2ax64z ^cmake@3.30.5~doc+ncurses+ownlibs~qtgui build_system=generic build_type=Release patches:=dbc3892 arch=linux-rhel9-x86_64
[+] 23ctxtu ^curl@8.10.1~gssapi~ldap~libidn2~librtmp~libssh~libssh2+nghttp2 build_system=autotools libs:=shared,static tls:=openssl arch=linux
-rhel9-x86_64
[+] cc5p5kr ^nghttp2@1.63.0 build_system=autotools arch=linux-rhel9-x86_64
[+] 7fa3xqy ^gzip@1.13 build_system=autotools arch=linux-rhel9-x86_64
[+] domncrg ^lzma@4.32.7 build_system=autotools arch=linux-rhel9-x86_64_v2 %c,cxx=gcc@14.3.0
[+] 67eru3s ^netlib-lapack@3.12.1+external-blas~ipo+lapacke+pic+shared~xblas build_system=cmake build_type=Release generator=make patches:=3059ebf,b1a
f8b6,e318340 arch=linux-rhel9-x86_64_v2 %c,fortran=gcc@14.3.0
[+] urlt355 ^openblas@0.3.30~bignuma~consistent_fpcsr+dynamic_dispatch+fortran~ilp64+locking+pic+shared build_system=makefile symbol_suffix=none threa
ds=openmp arch=linux-rhel9-x86_64_v2 %c,cxx,fortran=gcc@14.3.0
[+] nki4so2 ^openssl@3.4.0~docs+shared build_system=generic certs=mozilla arch=linux-rhel9-x86_64
[+] w5vxebg ^ca-certificates-mozilla@2023-05-30 build_system=generic arch=linux-rhel9-x86_64
[+] 7qy4lib ^python@3.12.12+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib
build_system=generic arch=linux-rhel9-x86_64_v2 %c,cxx=clang@17.0.6
[+] egtdhv7 ^expat@2.6.4+libbsd build_system=autotools arch=linux-rhel9-x86_64
[+] kniiap3 ^libbsd@0.12.2 build_system=autotools arch=linux-rhel9-x86_64
[+] olgtrui ^libmd@1.0.4 build_system=autotools arch=linux-rhel9-x86_64
[+] 4yjc634 ^gdbm@1.23 build_system=autotools arch=linux-rhel9-x86_64
[+] 5wwxeuz ^gettext@0.22.5+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel9-x86_64
[+] 72wkeuw ^tar@1.34 build_system=autotools zip=pigz arch=linux-rhel9-x86_64
[+] zktpnph ^pigz@2.8 build_system=makefile arch=linux-rhel9-x86_64
[+] 3vzfw2k ^libffi@3.4.8 build_system=autotools arch=linux-rhel9-x86_64_v2 %c,cxx=gcc@11.4.1
[+] wcp6jaz ^libxcrypt@4.4.38~obsolete_api build_system=autotools arch=linux-rhel9-x86_64_v2 %c=gcc@11.4.1
[+] ip2zpyi ^perl@5.40.0+cpanm+opcode+open+shared+threads build_system=generic arch=linux-rhel9-x86_64_v2 %c=gcc@11.4.1
[+] una2ij3 ^berkeley-db@18.1.40+cxx~docs+stl build_system=autotools patches:=26090f4,b231fcc arch=linux-rhel9-x86_64_v2 %c,cxx=gcc@11.4.1
[+] v6zm4r6 ^bzip2@1.0.8~debug~pic+shared build_system=generic arch=linux-rhel9-x86_64_v2 %c=gcc@11.4.1
[+] vabdhdq ^gdbm@1.23 build_system=autotools arch=linux-rhel9-x86_64_v2 %c=gcc@11.4.1
[+] 7jcobp5 ^readline@8.2 build_system=autotools patches:=1ea4349,24f587b,3d9885e,5911a5b,622ba38,6c8adf8,758e2ec,79572ee,a177edc,bbf9
7f1,c7b45ff,e0013d9,e065038 arch=linux-rhel9-x86_64_v2 %c=gcc@11.4.1
[+] qhi3vr7 ^pkgconf@2.3.0 build_system=autotools arch=linux-rhel9-x86_64_v2 %c=gcc@11.4.1
[+] pbukwvu ^readline@8.2 build_system=autotools patches:=bbf97f1 arch=linux-rhel9-x86_64
[+] xcstec2 ^util-linux-uuid@2.41 build_system=autotools arch=linux-rhel9-x86_64_v2 %c=gcc@11.4.1
[+] tbwkmx5 ^sqlite@3.46.0+column_metadata+dynamic_extensions+fts~functions+rtree build_system=autotools arch=linux-rhel9-x86_64
[+] rzipgyt ^zlib@1.3.1+optimize+pic+shared build_system=makefile arch=linux-rhel9-x86_64
[+] sbvnnkk ^zstd@1.5.6+programs build_system=makefile compression:=none libs:=shared,static arch=linux-rhel9-x86_64Error message
Here's an excerpt, see full details in attached error logs
Error message
[...] project/apps/apps_rhel9/spack/opt/spack/linux-x86_64/binutils-2.44-ncbmob4vav5peavjl3znop3sycayiwi3/bin/ld: /project/apps/apps_rhel9/spack/opt/spack/linux- x86_64_v2/netlib-lapack-3.12.1-67eru3smnwefee4ilebx7cqhj2yrvhnv/lib64/liblapack.so: undefined reference to `cswap_64_' /project/apps/apps_rhel9/spack/opt/spack/linux-x86_64/binutils-2.44-ncbmob4vav5peavjl3znop3sycayiwi3/bin/ld: /project/apps/apps_rhel9/spack/opt/spack/linux- x86_64_v2/netlib-lapack-3.12.1-67eru3smnwefee4ilebx7cqhj2yrvhnv/lib64/liblapack.so: undefined reference to `scnrm2_64_' /project/apps/apps_rhel9/spack/opt/spack/linux-x86_64/binutils-2.44-ncbmob4vav5peavjl3znop3sycayiwi3/bin/ld: /project/apps/apps_rhel9/spack/opt/spack/linux- x86_64_v2/netlib-lapack-3.12.1-67eru3smnwefee4ilebx7cqhj2yrvhnv/lib64/liblapack.so: undefined reference to `sgbmv_64_' /project/apps/apps_rhel9/spack/opt/spack/linux-x86_64/binutils-2.44-ncbmob4vav5peavjl3znop3sycayiwi3/bin/ld: /project/apps/apps_rhel9/spack/opt/spack/linux- x86_64_v2/netlib-lapack-3.12.1-67eru3smnwefee4ilebx7cqhj2yrvhnv/lib64/liblapack.so: undefined reference to `drot_64_' /project/apps/apps_rhel9/spack/opt/spack/linux-x86_64/binutils-2.44-ncbmob4vav5peavjl3znop3sycayiwi3/bin/ld: /project/apps/apps_rhel9/spack/opt/spack/linux- x86_64_v2/netlib-lapack-3.12.1-67eru3smnwefee4ilebx7cqhj2yrvhnv/lib64/liblapack.so: undefined reference to `ztpmv_64_' /project/apps/apps_rhel9/spack/opt/spack/linux-x86_64/binutils-2.44-ncbmob4vav5peavjl3znop3sycayiwi3/bin/ld: /project/apps/apps_rhel9/spack/opt/spack/linux- x86_64_v2/netlib-lapack-3.12.1-67eru3smnwefee4ilebx7cqhj2yrvhnv/lib64/liblapack.so: undefined reference to `ztrsv_64_' /project/apps/apps_rhel9/spack/opt/spack/linux-x86_64/binutils-2.44-ncbmob4vav5peavjl3znop3sycayiwi3/bin/ld: /project/apps/apps_rhel9/spack/opt/spack/linux- x86_64_v2/netlib-lapack-3.12.1-67eru3smnwefee4ilebx7cqhj2yrvhnv/lib64/liblapack.so: undefined reference to `chemm_64_' /project/apps/apps_rhel9/spack/opt/spack/linux-x86_64/binutils-2.44-ncbmob4vav5peavjl3znop3sycayiwi3/bin/ld: /project/apps/apps_rhel9/spack/opt/spack/linux- x86_64_v2/netlib-lapack-3.12.1-67eru3smnwefee4ilebx7cqhj2yrvhnv/lib64/liblapack.so: undefined reference to `dcopy_64_' [...]Information on your system
spack debug report
* **Spack:** 1.0.2 (https://github.com/spack/spack/commit/734c5db2121b01c373eed6538e452f18887e9e44)
* **Builtin repo:** https://github.com/spack/spack-packages/commit/61e3ec212c74ed8f817f9ad345404a094412abf8
* **Python:** 3.9.18
* **Platform:** linux-rhel9-sapphirerapids
Nothing too special custom, just a few externals defined like tar, cmake and some default variants for CUDA.
Additional information
Itseems the lapack regenie is picking up is not ilp64? I don't see any variants in netlib-lapack to specify this.
I tried removing the netlib-lapack dependency and force Spack to use openblas +ilp64 in the hope that would provide a proper lapack implementation, but it seems regenie needs a couple of patches in the CMakeLists.txt to have it pick OpenBLAS up as a valid lapack implementation.
spack-build-01-cmake-out.txt
spack-build-02-build-out.txt
spack-build-env.txt
spack-build-env-mods.txt
spack-build-out.txt
General information
- I have run
spack debug reportand reported the version of Spack/Python/Platform - I have run
spack maintainers <name-of-the-package>and @mentioned any maintainers - I have uploaded the build log and environment files
- I have searched the issues of this repo and believe this is not a duplicate