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Welcome to the online BioGraph™ User's Guide. This guide covers BioGraph v7.0.0 or later.

Conventions used in this guide

Our code examples include commands to be typed in orange, mixed with system messages you will see on your screen for context. For example:

$ echo "Hello World"
Hello World

Table of Contents

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BioGraph for Population Scale Genomics

Installation

Quick Start

Customizing the BioGraph Pipeline

What is Inside a BioGraph?

Optimizing Performance

Understanding Read Correction

BioGraph Command Reference

vdb Variant DataBase

System Requirements

Troubleshooting

For more help

Contact Spiral support if you have any questions about installing or running BioGraph.