add TBB targets to makefile

[wds15]

Submission Checklist

• Run unit tests: ./runTests.py src/test/unit
• Run cpplint: make cpplint
• Declare copyright holder and open-source license: see below

Summary

This adds the TBB targets to the makefiles. This PR needs to be merged with the Stan-math PR stan-dev/math#1180

Intended Effect

Make the Intel TBB available to stan.

How to Verify

Tests will link against the tbb, tbbmalloc & tbbmalloc_proxy libraries.

Side Effects

Documentation

Copyright and Licensing

Please list the copyright holder for the work you are submitting (this will be you or your assignee, such as a university or company): Sebastian Weber

By submitting this pull request, the copyright holder is agreeing to license the submitted work under the following licenses:

• Code: BSD 3-clause (https://opensource.org/licenses/BSD-3-Clause)
• Documentation: CC-BY 4.0 (https://creativecommons.org/licenses/by/4.0/)

[stan-buildbot]

(stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan, 1.13)
(stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan, 0.97)
(stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan, 1.04)
(stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan, 1.15)
(stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan, 1.18)
(stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan, 1.14)
(stat_comp_benchmarks/benchmarks/arK/arK.stan, 1.03)
(performance.compilation, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan, 1.0)
(stat_comp_benchmarks/benchmarks/sir/sir.stan, 1.15)
(stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan, 1.02)
(stat_comp_benchmarks/benchmarks/garch/garch.stan, 1.02)
(stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan, 1.0)
(stat_comp_benchmarks/benchmarks/arma/arma.stan, 1.03)
Result: 1.05870650445
Commit hash: 17a94d93b952089b351c49830adca2ef089decb7

[stan-buildbot]

(stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan, 1.14)
(stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan, 0.95)
(stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan, 1.04)
(stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan, 1.13)
(stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan, 1.18)
(stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan, 1.15)
(stat_comp_benchmarks/benchmarks/arK/arK.stan, 1.02)
(performance.compilation, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan, 1.01)
(stat_comp_benchmarks/benchmarks/sir/sir.stan, 1.13)
(stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan, 1.13)
(stat_comp_benchmarks/benchmarks/garch/garch.stan, 1.03)
(stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan, 1.0)
(stat_comp_benchmarks/benchmarks/arma/arma.stan, 1.05)
Result: 1.06294752099
Commit hash: a508c59325d93548c53591c5117c9be9532492f3

[stan-buildbot]

(stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan, 0.98)
(stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan, 1.0)
(stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan, 1.02)
(stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan, 0.99)
(stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan, 0.98)
(stat_comp_benchmarks/benchmarks/arK/arK.stan, 1.0)
(performance.compilation, 1.01)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan, 1.0)
(stat_comp_benchmarks/benchmarks/sir/sir.stan, 0.92)
(stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan, 0.99)
(stat_comp_benchmarks/benchmarks/garch/garch.stan, 1.0)
(stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan, 1.01)
(stat_comp_benchmarks/benchmarks/arma/arma.stan, 0.99)
Result: 0.99293088041
Commit hash: b7086b0

[stan-buildbot]

(stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan, 1.1)
(stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan, 0.97)
(stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan, 1.03)
(stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan, 1.21)
(stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan, 1.14)
(stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan, 1.16)
(stat_comp_benchmarks/benchmarks/arK/arK.stan, 1.02)
(performance.compilation, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan, 1.01)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan, 1.0)
(stat_comp_benchmarks/benchmarks/sir/sir.stan, 1.1)
(stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan, 1.13)
(stat_comp_benchmarks/benchmarks/garch/garch.stan, 1.03)
(stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan, 0.98)
(stat_comp_benchmarks/benchmarks/arma/arma.stan, 1.05)
Result: 1.06266792755
Commit hash: de3cb0694bd6f6ea9d42319d4b3d124e064bf633

[stan-buildbot]

(stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan, 1.1)
(stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan, 0.98)
(stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan, 1.03)
(stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan, 1.18)
(stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan, 1.14)
(stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan, 1.14)
(stat_comp_benchmarks/benchmarks/arK/arK.stan, 1.02)
(performance.compilation, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan, 1.0)
(stat_comp_benchmarks/benchmarks/sir/sir.stan, 1.08)
(stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan, 1.12)
(stat_comp_benchmarks/benchmarks/garch/garch.stan, 1.04)
(stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan, 1.0)
(stat_comp_benchmarks/benchmarks/arma/arma.stan, 1.03)
Result: 1.05885646212
Commit hash: de3cb0694bd6f6ea9d42319d4b3d124e064bf633

[stan-buildbot]

(stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan, 1.0)
(stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan, 1.0)
(stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan, 0.98)
(stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan, 1.03)
(stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan, 0.92)
(stat_comp_benchmarks/benchmarks/arK/arK.stan, 0.99)
(performance.compilation, 1.03)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan, 1.01)
(stat_comp_benchmarks/benchmarks/sir/sir.stan, 1.0)
(stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan, 1.0)
(stat_comp_benchmarks/benchmarks/garch/garch.stan, 1.03)
(stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan, 0.97)
(stat_comp_benchmarks/benchmarks/arma/arma.stan, 0.98)
Result: 0.99552004834
Commit hash: b1773ff

[stan-buildbot]

(stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan, 0.99)
(stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan, 1.01)
(stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan, 1.01)
(stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan, 1.04)
(stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan, 0.99)
(stat_comp_benchmarks/benchmarks/arK/arK.stan, 1.0)
(performance.compilation, 1.01)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan, 1.0)
(stat_comp_benchmarks/benchmarks/sir/sir.stan, 1.0)
(stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan, 1.0)
(stat_comp_benchmarks/benchmarks/garch/garch.stan, 1.0)
(stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan, 0.98)
(stat_comp_benchmarks/benchmarks/arma/arma.stan, 1.01)
Result: 1.00282111606
Commit hash: 421bd63

[stan-buildbot]

(stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan, 0.99)
(stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan, 0.97)
(stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan, 1.0)
(stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan, 0.98)
(stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan, 0.98)
(stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan, 1.0)
(stat_comp_benchmarks/benchmarks/arK/arK.stan, 1.0)
(performance.compilation, 0.99)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan, 1.01)
(stat_comp_benchmarks/benchmarks/sir/sir.stan, 0.99)
(stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan, 1.0)
(stat_comp_benchmarks/benchmarks/garch/garch.stan, 0.99)
(stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan, 0.95)
(stat_comp_benchmarks/benchmarks/arma/arma.stan, 1.0)
Result: 0.98936325739
Commit hash: 8c18f2b704446116499f7b4c87c0144791b33c7e

[stan-buildbot]

(stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan, 1.0)
(stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan, 0.96)
(stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan, 1.0)
(stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan, 0.98)
(stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan, 0.98)
(stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan, 1.0)
(stat_comp_benchmarks/benchmarks/arK/arK.stan, 1.0)
(performance.compilation, 0.99)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan, 0.97)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan, 1.01)
(stat_comp_benchmarks/benchmarks/sir/sir.stan, 1.01)
(stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan, 1.0)
(stat_comp_benchmarks/benchmarks/garch/garch.stan, 0.99)
(stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan, 0.99)
(stat_comp_benchmarks/benchmarks/arma/arma.stan, 0.98)
Result: 0.99085982256
Commit hash: 8c18f2b704446116499f7b4c87c0144791b33c7e

[rok-cesnovar]

Looks great!

[stan-buildbot]

(stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan, 0.99)
(stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan, 1.02)
(stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan, 1.0)
(stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan, 0.96)
(stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan, 1.0)
(stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan, 0.99)
(stat_comp_benchmarks/benchmarks/arK/arK.stan, 1.01)
(performance.compilation, 1.03)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan, 0.99)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan, 1.0)
(stat_comp_benchmarks/benchmarks/sir/sir.stan, 1.01)
(stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan, 1.0)
(stat_comp_benchmarks/benchmarks/garch/garch.stan, 1.02)
(stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan, 0.98)
(stat_comp_benchmarks/benchmarks/arma/arma.stan, 1.0)
Result: 0.99995075571
Commit hash: 89c5b4a

[stan-buildbot]

(stat_comp_benchmarks/benchmarks/gp_pois_regr/gp_pois_regr.stan, 1.17)
(stat_comp_benchmarks/benchmarks/low_dim_corr_gauss/low_dim_corr_gauss.stan, 0.98)
(stat_comp_benchmarks/benchmarks/irt_2pl/irt_2pl.stan, 1.05)
(stat_comp_benchmarks/benchmarks/pkpd/one_comp_mm_elim_abs.stan, 1.17)
(stat_comp_benchmarks/benchmarks/eight_schools/eight_schools.stan, 1.2)
(stat_comp_benchmarks/benchmarks/gp_regr/gp_regr.stan, 1.15)
(stat_comp_benchmarks/benchmarks/arK/arK.stan, 1.02)
(performance.compilation, 0.99)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix_collapse/low_dim_gauss_mix_collapse.stan, 0.99)
(stat_comp_benchmarks/benchmarks/low_dim_gauss_mix/low_dim_gauss_mix.stan, 1.01)
(stat_comp_benchmarks/benchmarks/sir/sir.stan, 1.11)
(stat_comp_benchmarks/benchmarks/pkpd/sim_one_comp_mm_elim_abs.stan, 1.08)
(stat_comp_benchmarks/benchmarks/garch/garch.stan, 1.03)
(stat_comp_benchmarks/benchmarks/gp_regr/gen_gp_data.stan, 1.04)
(stat_comp_benchmarks/benchmarks/arma/arma.stan, 1.07)
Result: 1.07110834232
Commit hash: e7257882e9ab34bac7f2866636551dd249599a0e