Code

Parallel Adaptive Nuts#3033

Code

Merged

SteveBronder merged 67 commits intodevelopstan-dev/stan:developfrom feature/parallel-nutsstan-dev/stan:feature/parallel-nutsCopy head branch name to clipboardJul 26, 2021

+1,286-71

Commits

Commits on Mar 20, 2021

• adds file_stream_writer and run_adaptive_sampler method for parallel

  SteveBronder

  committed
  5edf4e2

Commits on Mar 21, 2021

• fix grammar error for parallel run_adaptive_sampler

  SteveBronder

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• [Jenkins] auto-formatting by clang-format version 6.0.0-1ubuntu2~16.04.1 (tags/RELEASE_600/final)

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• adds test for parallel adaptive

  SteveBronder

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• include mutex

  SteveBronder

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• make stream_writer not final

  SteveBronder

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• init threadpool

  SteveBronder

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  3ebbc5c

Commits on Mar 24, 2021

• update generate_transitions and cleanup run_adaptive_sampler

  SteveBronder

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  a3bf12b

• Merge commit '7eeaf3c58fdd1c40aa62ba7158106529f2fd9563' into HEAD

  yashikno

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• start diag_e_adapt parallel

  SteveBronder

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  117274f

• adds tests for parallel adapter

  SteveBronder

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  99d64c1

• Merge remote-tracking branch 'origin/develop' into feature/parallel-adaptive

  SteveBronder

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  35f88a7

• remove statics from softmax metric and cleanup tests

  SteveBronder

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  ebeb1f9

• update to feature/parallel-adapt

  SteveBronder

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  142a94a

• use normal diag_e_adapt if n_chain == 0

  SteveBronder

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Commits on Mar 25, 2021

• [Jenkins] auto-formatting by clang-format version 6.0.0-1ubuntu2~16.04.1 (tags/RELEASE_600/final)

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• use parallel loop around run_adaptive_sampler

  SteveBronder

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  34114be

• remove run_adaptive_sampler parallel version

  SteveBronder

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  8458782

• update to remove parallel run_adaptive_sampler

  SteveBronder

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  38e168d

• Merge commit 'f3bf21bc20271ebb9f7c9613bdb17c16d5cc0c1b' into HEAD

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• update get_context to return back the input

  SteveBronder

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  427769c

Commits on Mar 29, 2021

• update math

  SteveBronder

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  f654f37

Commits on Mar 30, 2021

• update with docs

  SteveBronder

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  df1542e

• update stan math

  SteveBronder

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  0a5075b

• update file streamer and adapt

  SteveBronder

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  ce2b7a1

• update stan math

  SteveBronder

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Commits on Mar 31, 2021

• adds dense_e_adapt for parallel chains

  SteveBronder

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  059a176

• Merge branch 'feature/parallel-nuts' of github.com:stan-dev/stan into feature/parallel-nuts

  SteveBronder

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  d99daa0

• Merge commit '55f6e5794c1a5a76f8cf23bc154dd254ede3258e' into HEAD

  yashikno

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Commits on Apr 13, 2021

• Merge remote-tracking branch 'origin/develop' into feature/parallel-nuts

  SteveBronder

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  ddfcf86

Commits on Apr 22, 2021

• Merge remote-tracking branch 'origin/develop' into feature/parallel-nuts

  SteveBronder

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  a2666e4

• update to reflect parallel chain design doc

  SteveBronder

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Commits on May 12, 2021

• Merge remote-tracking branch 'origin/develop' into feature/parallel-nuts

  SteveBronder

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  f69b139

• make changes so API matches up with design doc

  SteveBronder

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  e1e37a4

• update docs

  SteveBronder

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  ea9a556

• Merge branch 'feature/parallel-nuts' of github.com:stan-dev/stan into feature/parallel-nuts

  SteveBronder

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  f3adfb6

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Commits on Jun 15, 2021

• Merge remote-tracking branch 'origin/develop' into feature/parallel-nuts

  SteveBronder

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  ada9dcb

• update so tbb is only used when STAN_THREADS is defined

  SteveBronder

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  bd76742

• update to use simple partitioner

  SteveBronder

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  851ba01

• fix chain_id default so all is 1

  SteveBronder

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  429e7de

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Commits on Jun 28, 2021

• Merge remote-tracking branch 'origin/develop' into feature/parallel-nuts

  SteveBronder

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  45d64b3

• update create_rng() to follow the design doc

  SteveBronder

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Commits on Jun 29, 2021

• adds template to unique_stream_writer to set the stream type, adds test for checking multi vs. single chain results

  SteveBronder

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  fa22037

• Merge branch 'feature/parallel-nuts' of github.com:stan-dev/stan into feature/parallel-nuts

  SteveBronder

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  34baa29

• Merge remote-tracking branch 'origin/develop' into feature/parallel-nuts

  SteveBronder

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Commits on Jun 30, 2021

• Merge remote-tracking branch 'origin/develop' into feature/parallel-nuts

  SteveBronder

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  07b2230

• update dense and diag adapt for math changes

  SteveBronder

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  51c4472

Commits on Jul 1, 2021

• Merge remote-tracking branch 'origin/develop' into feature/parallel-nuts

  SteveBronder

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  9866ef0

• cleanup docs and change printout of chain number to take the initial chain id into account

  SteveBronder

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Commits on Jul 2, 2021

• update printing logic

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Commits on Jul 7, 2021

• update to remove +1 from chain number

  SteveBronder

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  569df85

Commits on Jul 19, 2021

• Merge remote-tracking branch 'origin/develop' into feature/parallel-nuts

  SteveBronder

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  bbf4d37

• Make sure to use num_chains instead of n_chain everywhere, fix docs, removes unneeded else branch

  SteveBronder

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