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Version 2.2 #778

Merged
merged 58 commits into from
Nov 18, 2024
Merged

Version 2.2 #778

merged 58 commits into from
Nov 18, 2024

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cliffckerr
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@cliffckerr cliffckerr commented Nov 18, 2024 •
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Description

  • Changes calibration approach
  • Provides R support

Checklist

  • Code commented & docstrings added
  • New tests were needed and have been added
  • A new version number was needed & changelog has been updated
  • A new PyPI version needs to be released

daniel-klein and others added 30 commits October 18, 2024 15:36
@daniel-klein
Making quick progress, but still much to do.
3ed73ee
@daniel-klein
Good progress on the API, almost there
13ce0e1
@daniel-klein
Stopping here for now. Need a general way to know if a parameter is "…
7db30ee 
…prevalent" or "incident" as part of evaluating fit. Also need to perform an integration for incident parameters, in case times and observed times don't align.
@daniel-klein
Starting work on a CalibComponent. WIP
aac65c5
@daniel-klein
WIP on components
c71e5d9
@daniel-klein
conforming seems to work
f95ff6b
@daniel-klein
WIP
80af5c0
@daniel-klein
correcting a typo in a comment
e0b57d7
@daniel-klein
Experimenting with Ax + BoTorch
94c0585
@daniel-klein
Merge branch 'rc2.1.0' into calib-uplift
072f97c
@daniel-klein
Merge branch 'rc2.1.0' into calib-uplift
16ddd5b
@daniel-klein
Addressing stochasticity in Births related to dicussion in Unstable V…
7068139 
…ital Dynamics #695
@daniel-klein
Updating baselines
9d8f87c
@daniel-klein
Addressing match_time_inds fails #750
faa8d8d
@daniel-klein
Merge branch 'stochasticbirths' into calib-uplift for v2.1.1 compatib…
8b965fb 
…ility
@daniel-klein
Adding Ax+BoTorch example
05bf41c
@daniel-klein
Removing save_results
ddc0e25
@daniel-klein
Addressing #754
a620799
@daniel-klein
Adding negative Binomial distribution #755
ca93f2f
@daniel-klein
Beta-Binomial likelihood working for SIR example
8e2dd74
Beginning work on a calibration tutorial
ee1da91
Continued work on the calibration tutorial
acffe50
@daniel-klein
Needs cleanup and additional comments, but working.
dd9a184
@cliffckerr
add reticulate setting
0368fdf
@daniel-klein
Calib tutorial improvements
a601aab
@daniel-klein
Adding Gamma Poisson likelihood
7eaa99a
@daniel-klein
Merge branch 'calib-uplift' of github.com:starsimhub/starsim into cal…
b04f585 
…ib-uplift
@daniel-klein
Minor text and plotting improvements.
de626cd
@cliffckerr
add reticulate catch and update version
258507c
@cliffckerr
move ax to devtests
f696cc9
@cliffckerr
update docstring
3149377
@cliffckerr
update dist list
41c4c4f
@cliffckerr
Merge pull request #749 from starsimhub/stochasticbirths
62db735 
Addressing stochasticity in Births related to dicussion in Unstable Vital Dynamics #695
@cliffckerr cliffckerr added this to the Version 2.2 milestone Nov 18, 2024
@cliffckerr cliffckerr mentioned this pull request Nov 18, 2024
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@cliffckerr cliffckerr mentioned this pull request Nov 18, 2024
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@cliffckerr cliffckerr mentioned this pull request Nov 18, 2024
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@cliffckerr cliffckerr mentioned this pull request Nov 18, 2024
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@cliffckerr cliffckerr mentioned this pull request Nov 18, 2024
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@cliffckerr cliffckerr mentioned this pull request Nov 18, 2024
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@cliffckerr cliffckerr mentioned this pull request Nov 18, 2024
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@cliffckerr cliffckerr marked this pull request as ready for review November 18, 2024 14:40
@cliffckerr cliffckerr merged commit 849245e into main Nov 18, 2024
2 of 3 checks passed
@cliffckerr cliffckerr deleted the rc2.2 branch November 18, 2024 15:35
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@cliffckerr @daniel-klein