experimental design

statOmics · Aug 26, 2024 · 1ae4c6f · 1ae4c6f
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diff --git a/_site.yml b/_site.yml
@@ -8,6 +8,8 @@ navbar:
     - text: "Topics"
       icon: fa-chalkboard-teacher
       menu:
+      - text: Experimental Design
+        href: pda_experimentalDesign1.html
       - text: Quantification - Preprocessing
         href: pda_quantification_preprocessing.html
       - text: Wrap-up Preprocessing - Peptide-Level-Models

diff --git a/figures/blockingMouseTmds.png b/figures/blockingMouseTmds.png
diff --git a/figures/brunner2022PCA-orig.png b/figures/brunner2022PCA-orig.png
diff --git a/figures/brunner2022mainFig.jpg b/figures/brunner2022mainFig.jpg
diff --git a/figures/brunnerPCABatch.png b/figures/brunnerPCABatch.png
diff --git a/figures/brunnerPCACellCycle.png b/figures/brunnerPCACellCycle.png
diff --git a/figures/fevMeasurement.jpg b/figures/fevMeasurement.jpg
diff --git a/figures/labelVsLabelFree.png b/figures/labelVsLabelFree.png
diff --git a/figures/mouseCage.png b/figures/mouseCage.png
diff --git a/figures/mouseCageblocking.png b/figures/mouseCageblocking.png
diff --git a/figures/placebo.png b/figures/placebo.png
diff --git a/figures/sumVarComp.png b/figures/sumVarComp.png
diff --git a/index.Rmd b/index.Rmd
@@ -68,12 +68,14 @@ If you encounter problems related to the course material (e.g. package installat
 ### Detailed Program
 
 
-  1. Preprocessing & Analysis of Label Free Quantitative Proteomics Experiments with Simple Designs
+  1. Introduction to experimental design: [Experimental Design](./pda_experimentalDesign1.html), [[PDF]](./pda_experimentalDesign1.pdf)
+
+  2. Preprocessing & Analysis of Label Free Quantitative Proteomics Experiments with Simple Designs
   - Lecture: [Preprocessing](./pda_quantification_preprocessing.html), [[PDF](./pda_quantification_preprocessing.pdf)]
   - Tutorial: [preprocessing](./pda_tutorialPreprocessing.html)
   - Wrap-up: [Peptide-based Models](./pda_robustSummarisation_peptideModels.html)[[PDF](./pda_robustSummarisation_peptideModels.pdf)]
 
-  2. Statistical Inference & Analysis of Experiments with Factorial Designs
+  3. Statistical Inference & Analysis of Experiments with Factorial Designs
   - Lecture: [Differential Abundance Analysis](./pda_quantification_inference.html), [[PDF](./pda_quantification_inference.pdf)]
   - Tutorial: [Design](pda_tutorialDesign.html)
   - Wrap-up: [Blocking](./pda_blocking_wrapup.html)[[PDF](./pda_blocking_wrapup.pdf)]