update RNA-seq

_site.yml

@@ -27,6 +27,13 @@ navbar:
         href: pda_quantification_inference.html
       - text: 2.3.2. Wrap-up DA - Blocking
         href: pda_blocking_wrapup.html
+      - text: 2.3.3 Technical Details
+        href: technicalDetailsProteomics.html
+      - text: ---- MODULE II RNA-seq ----
+      - text: 1.  Introduction to RNA-seq
+        href: sequencing_intro.html
+      - text: 2.  Working with count data and GLMs
+        href: sequencing_countData.html
 
     - text: "tutorials"
       icon: fa-laptop
@@ -43,6 +50,14 @@ navbar:
         href: pda_tutorialPreprocessing.html
       - text: 2.3. Quantification - Design
         href: pda_tutorialDesign.html   
+      - text: ---- MODULE II RNA-seq ----
+      - text: 1. Read mapping 
+        href: sequencingTutorial1_mapping.html
+      - text: 2. Working with Count Data
+        href: sequencingTutorial2_DE.html
+      - text: 3. Single Cell RNA-seq Data Analysis
+        href: scRNA-seq-Tutorial.html
+
 
 right:
     - icon: fab fa-github      

index.Rmd

@@ -89,7 +89,7 @@ source("https://raw.githubusercontent.com/statOmics/SGA/master/install.R")
   - Tutorial: [Design](pda_tutorialDesign.html)
   - Wrap-up Blocking: [html](./pda_blocking_wrapup.html), [pdf](./pda_blocking_wrapup.pdf)
 
-<!--
+
   - Solution: [Heart Example](heartMainInteraction.html)
   - Technical Details: [Technical Details](technicalDetailsProteomics.html)
 
@@ -109,6 +109,7 @@ source("https://raw.githubusercontent.com/statOmics/SGA/master/install.R")
 
 - Lecture: [html](./sequencing_technicalDE.html), [pdf](./sequencing_technicalDE.pdf)
 
+<!--
 ### 4. Solutions Bulk RNA-seq Data Analysis
 
 - Parathyroid Example: [html](./parathyroid.html), [pdf](./parathyroid.pdf)