feat: add C implementation for stats/base/dists/geometric/logcdf
#10709
Workflow file for this run
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| #/ | |
| # @license Apache-2.0 | |
| # | |
| # Copyright (c) 2023 The Stdlib Authors. | |
| # | |
| # Licensed under the Apache License, Version 2.0 (the "License"); | |
| # you may not use this file except in compliance with the License. | |
| # You may obtain a copy of the License at | |
| # | |
| # http://www.apache.org/licenses/LICENSE-2.0 | |
| # | |
| # Unless required by applicable law or agreed to in writing, software | |
| # distributed under the License is distributed on an "AS IS" BASIS, | |
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| # See the License for the specific language governing permissions and | |
| # limitations under the License. | |
| #/ | |
| # Workflow name: | |
| name: run_tests_coverage | |
| # Workflow triggers: | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| paths: | |
| # List paths for which changes should trigger this workflow: | |
| - 'lib/**/bin/**' | |
| - 'lib/**/data/**' | |
| - 'lib/**/etc/**' | |
| - 'lib/**/include/**' | |
| - 'lib/**/lib/**' | |
| - 'lib/**/src/**' | |
| - 'lib/**/test/**' | |
| - 'lib/**/*.gyp' | |
| - 'lib/**/*.gypi' | |
| - 'lib/**/manifest.json' | |
| - 'package.json' | |
| # List paths for which changes should *not* trigger this workflow: | |
| - '!lib/**/_tools/**' | |
| pull_request_target: | |
| types: | |
| - opened | |
| - synchronize | |
| - reopened | |
| paths: | |
| # List paths for which changes should trigger this workflow: | |
| - 'lib/**/bin/**' | |
| - 'lib/**/data/**' | |
| - 'lib/**/etc/**' | |
| - 'lib/**/include/**' | |
| - 'lib/**/lib/**' | |
| - 'lib/**/src/**' | |
| - 'lib/**/test/**' | |
| - 'lib/**/*.gyp' | |
| - 'lib/**/*.gypi' | |
| - 'lib/**/manifest.json' | |
| - 'package.json' | |
| # List paths for which changes should *not* trigger this workflow: | |
| - '!lib/**/_tools/**' | |
| workflow_dispatch: | |
| inputs: | |
| directories: | |
| description: 'List of changed directories for which to run tests (space separated):' | |
| # Global permissions: | |
| permissions: | |
| # Allow read-only access to the repository contents: | |
| contents: read | |
| # Workflow jobs: | |
| jobs: | |
| # Define a job for calculating test coverage for changed files... | |
| coverage: | |
| # Define a display name: | |
| name: 'Calculate test coverage for packages' | |
| # Define the type of virtual host machine: | |
| runs-on: ubuntu-latest | |
| # Define the sequence of job steps... | |
| steps: | |
| # Checkout the repository: | |
| - name: 'Checkout repository' | |
| # Pin action to full length commit SHA | |
| uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 | |
| with: | |
| # Specify whether to remove untracked files before checking out the repository: | |
| clean: true | |
| # Limit clone depth to the last 1000 commits: | |
| fetch-depth: 1000 | |
| # Specify whether to download Git-LFS files: | |
| lfs: false | |
| # Checkout PR branch if triggered by a pull request: | |
| ref: ${{ github.event_name == 'pull_request_target' && github.event.pull_request.head.sha || '' }} | |
| # Checkout PR repository (to properly work with forks) if triggered by a pull request: | |
| repository: ${{ github.event_name == 'pull_request_target' && github.event.pull_request.head.repo.full_name || github.repository }} | |
| timeout-minutes: 10 | |
| # Install Node.js: | |
| - name: 'Install Node.js' | |
| # Pin action to full length commit SHA | |
| uses: actions/setup-node@39370e3970a6d050c480ffad4ff0ed4d3fdee5af # v4.1.0 | |
| with: | |
| node-version: 20 # 'lts/*' | |
| timeout-minutes: 5 | |
| # Install dependencies (accounting for possible network failures, etc, when installing node module dependencies): | |
| - name: 'Install dependencies' | |
| run: | | |
| make install-node-modules || make install-node-modules || make install-node-modules | |
| timeout-minutes: 15 | |
| # Initialize development environment: | |
| - name: 'Initialize development environment' | |
| run: | | |
| make init | |
| timeout-minutes: 5 | |
| # Get list of changed directories from PR and push events: | |
| - name: 'Get list of changed directories' | |
| if: github.event_name != 'workflow_dispatch' | |
| id: changed-directories | |
| continue-on-error: true | |
| env: | |
| STDLIB_BOT_GITHUB_TOKEN: ${{ secrets.STDLIB_BOT_GITHUB_TOKEN }} | |
| run: | | |
| if [ -n "${{ github.event.pull_request.number }}" ]; then | |
| # Get the list of changed files in pull request: | |
| page=1 | |
| files="" | |
| while true; do | |
| changed_files=$(curl -s -H "Accept: application/vnd.github.v3+json" -H "Authorization: Bearer $STDLIB_BOT_GITHUB_TOKEN" "https://api.github.com/repos/stdlib-js/stdlib/pulls/${{ github.event.pull_request.number }}/files?page=$page&per_page=100" | jq -r '.[] | .filename') | |
| if [ -z "$changed_files" ]; then | |
| break | |
| fi | |
| files="$files $changed_files" | |
| page=$((page+1)) | |
| done | |
| files=$(echo "$files" | tr '\n' ' ' | sed 's/ $//') | |
| else | |
| # Get changed files by comparing the current commit to the commit before the push event or with its parent: | |
| if [ "${{ github.event.before }}" == "0000000000000000000000000000000000000000" ]; then | |
| files=$(git diff --diff-filter=AM --name-only HEAD~ ${{ github.event.after }}) | |
| else | |
| files=$(git diff --diff-filter=AM --name-only ${{ github.event.before }} ${{ github.event.after }}) | |
| fi | |
| fi | |
| directories=$(for file in $files; do dirname $file; done | uniq | tr '\n' ' ' | sed 's/ $//') | |
| echo "directories=${directories}" >> $GITHUB_OUTPUT | |
| # Get list of changed directories from workflow dispatch event: | |
| - name: 'Get list of changed directories (from user input)' | |
| if: github.event_name == 'workflow_dispatch' | |
| id: changed-directories-user-input | |
| run: | | |
| echo "directories=${{ github.event.inputs.directories }}" >> $GITHUB_OUTPUT | |
| timeout-minutes: 5 | |
| # Run JavaScript tests: | |
| - name: 'Run JavaScript tests' | |
| id: extract-coverage | |
| env: | |
| GITHUB_REPO: ${{ github.repository }} | |
| GITHUB_REF: ${{ github.ref }} | |
| run: | | |
| if [ "${{ github.event_name }}" == "workflow_dispatch" ]; then | |
| directories="${{ steps.changed-directories-user-input.outputs.directories }}" | |
| else | |
| directories="${{ steps.changed-directories.outputs.directories }}" | |
| fi | |
| # Append suffix to coverage base URL for PRs: | |
| if [ -n "${{ github.event.pull_request.number }}" ]; then | |
| PR_NUMBER=${{ github.event.pull_request.number }} | |
| export COVERAGE_BASE_URL="https://coverage.stdlib.io/pr-${PR_NUMBER}" | |
| else | |
| export COVERAGE_BASE_URL="https://coverage.stdlib.io" | |
| fi | |
| . "$GITHUB_WORKSPACE/.github/workflows/scripts/run_tests_coverage" "$directories" | |
| timeout-minutes: 30 | |
| # Create final coverage report: | |
| - name: 'Create final coverage report' | |
| id: create-report | |
| run: | | |
| table="${{ steps.extract-coverage.outputs.table }}" | |
| if [ -z "$table" ]; then | |
| report="## Coverage Report\n\nNo coverage information available." | |
| else | |
| if [ "${{ github.event_name }}" == "pull_request_target" ]; then | |
| compare_url="https://github.com/stdlib-js/stdlib/compare/${{ github.event.pull_request.base.sha }}...${{ github.event.pull_request.head.sha }}" | |
| compare_txt="The above coverage report was generated for the [changes in this PR]($compare_url)." | |
| elif [ "${{ github.event_name }}" == "push" ]; then | |
| compare_url="https://github.com/stdlib-js/stdlib/compare/${{ github.event.before }}...${{ github.event.after }}" | |
| compare_txt="The above coverage report was generated for the [changes in this push]($compare_url)." | |
| else | |
| compare_txt="" | |
| fi | |
| report="## Coverage Report\n\n${table}\n\n${compare_txt}" | |
| fi | |
| echo "report=$report" >> $GITHUB_OUTPUT | |
| # Post report as comment to PR: | |
| - name: 'Post report as comment to PR' | |
| if: github.event_name == 'pull_request_target' | |
| # Pin action to full length commit SHA | |
| uses: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea # v7.0.1 | |
| with: | |
| github-token: ${{ secrets.CHATBOT_GITHUB_TOKEN }} | |
| script: | | |
| const { data: comments } = await github.rest.issues.listComments({ | |
| 'issue_number': context.issue.number, | |
| 'owner': context.repo.owner, | |
| 'repo': context.repo.repo, | |
| }); | |
| const botComment = comments.find( comment => comment.user.login === 'stdlib-bot' && comment.body.includes( '## Coverage Report' ) ); | |
| if ( botComment ) { | |
| await github.rest.issues.updateComment({ | |
| 'owner': context.repo.owner, | |
| 'repo': context.repo.repo, | |
| 'comment_id': botComment.id, | |
| 'body': `${{ steps.create-report.outputs.report }}` | |
| }); | |
| } else { | |
| await github.rest.issues.createComment({ | |
| 'issue_number': context.issue.number, | |
| 'owner': context.repo.owner, | |
| 'repo': context.repo.repo, | |
| 'body': `${{ steps.create-report.outputs.report }}` | |
| }); | |
| } | |
| # Post report as comment to commit: | |
| - name: 'Post report as comment to commit' | |
| if: github.event_name == 'push' | |
| # Pin action to full length commit SHA | |
| uses: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea # v7.0.1 | |
| with: | |
| github-token: ${{ secrets.CHATBOT_GITHUB_TOKEN }} | |
| script: | | |
| github.rest.repos.createCommitComment({ | |
| 'commit_sha': context.sha, | |
| 'owner': context.repo.owner, | |
| 'repo': context.repo.repo, | |
| 'body': '${{ steps.create-report.outputs.report }}' | |
| }) | |
| # Checkout coverage repository: | |
| - name: 'Checkout coverage repository' | |
| # Pin action to full length commit SHA | |
| uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 | |
| with: | |
| # Code coverage repository: | |
| repository: 'stdlib-js/www-test-code-coverage' | |
| # File path to checkout to: | |
| path: './www-test-code-coverage' | |
| # Specify whether to remove untracked files before checking out the repository: | |
| clean: false | |
| # Limit clone depth to the most recent commit: | |
| fetch-depth: 1 | |
| # Token for accessing the repository: | |
| token: ${{ secrets.REPO_GITHUB_TOKEN }} | |
| # Checkout coverage repository branch: | |
| - name: 'Checkout coverage repository branch' | |
| run: | | |
| cd ./www-test-code-coverage | |
| if [[ "${{ github.event_name }}" == "pull_request_target" ]]; then | |
| BRANCH_NAME="pr-${{ github.event.pull_request.number }}" | |
| git fetch origin $BRANCH_NAME || true | |
| git checkout $BRANCH_NAME || git checkout -b $BRANCH_NAME | |
| # Remove all directories except .github and .git from branch: | |
| find . -mindepth 1 -maxdepth 1 -type d -not -name '.github' -not -name '.git' -exec git rm -rf {} + | |
| else | |
| BRANCH_NAME="main" | |
| fi | |
| # Copy artifacts to the repository: | |
| - name: 'Copy artifacts to the repository' | |
| run: | | |
| if [ -d "./artifacts" ]; then | |
| cp -R ./artifacts/* ./www-test-code-coverage | |
| # Get commit SHA and timestamp: | |
| commit_sha=$(git rev-parse HEAD) | |
| commit_timestamp=$(git show -s --format=%ci $commit_sha) | |
| # Append coverage to ndjson files: | |
| files=$(find ./artifacts -name 'index.html') | |
| for file in $files; do | |
| file=${file//artifacts/www-test-code-coverage} | |
| coverage=$(echo -n '['; grep -oP "(?<=class='fraction'>)[0-9]+/[0-9]+" $file | awk -F/ '{ if ($2 != 0) print $1 "," $2 "," ($1/$2)*100; else print $1 "," $2 ",100" }' | tr '\n' ',' | sed 's/,$//'; echo -n ",\"$commit_sha\",\"$commit_timestamp\"]") | |
| echo $coverage >> $(dirname $file)/coverage.ndjson | |
| done | |
| else | |
| echo "The artifacts directory does not exist." | |
| fi | |
| # Import GPG key to sign commits: | |
| - name: 'Import GPG key to sign commits' | |
| # Pin action to full length commit SHA | |
| uses: crazy-max/ghaction-import-gpg@cb9bde2e2525e640591a934b1fd28eef1dcaf5e5 # v6.2.0 | |
| with: | |
| gpg_private_key: ${{ secrets.STDLIB_BOT_GPG_PRIVATE_KEY }} | |
| passphrase: ${{ secrets.STDLIB_BOT_GPG_PASSPHRASE }} | |
| git_user_signingkey: true | |
| git_commit_gpgsign: true | |
| # Commit and push changes: | |
| - name: 'Commit and push changes' | |
| env: | |
| REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} | |
| USER_NAME: stdlib-bot | |
| run: | | |
| cd ./www-test-code-coverage | |
| git config --local user.email "82920195+stdlib-bot@users.noreply.github.com" | |
| git config --local user.name "stdlib-bot" | |
| git add . | |
| git commit -m "Update artifacts" || exit 0 | |
| git push "https://$USER_NAME:$REPO_GITHUB_TOKEN@github.com/stdlib-js/www-test-code-coverage.git" $BRANCH_NAME |