Search results

Inconsistent FoldMason alignments with near-identical AF2 inputs

Status: Open.

#27 In steineggerlab/foldmason;

· RumoisteinKartenspiel opened on Jul 28, 2025

segmentation fault with --refine-iters (bug?)

Status: Open.

#26 In steineggerlab/foldmason;

· vmkhot opened on Jul 7, 2025

Obtaining tree branch lengths

Status: Open.

#25 In steineggerlab/foldmason;

· zoeyxyang opened on Jul 3, 2025

request for foldmason server: accept input from foldseek server

enhancementNew feature or requestNew feature or request

Status: Open.

#24 In steineggerlab/foldmason;

· rubenalv opened on May 20, 2025

Using MSTA and HMMER like method to search common structure features in big database

Status: Open.

#23 In steineggerlab/foldmason;

· sevengo8378 opened on Apr 28, 2025

TM-align structure superposition doesn't reflect the underlying MSA

Status: Open.

#21 In steineggerlab/foldmason;

· apcamargo opened on Mar 17, 2025

"Found nan" during msa2lddtreport

Status: Open.

#20 In steineggerlab/foldmason;

· delalamo opened on Feb 19, 2025

I have a question regarding the results of FoldMason.

Status: Open.

#19 In steineggerlab/foldmason;

· tzjsdss opened on Feb 16, 2025

Getting foldmason aa.fa, ss.fa, and .nw files when running Foldseek locally

Status: Open.

#18 In steineggerlab/foldmason;

· khabj-snek opened on Feb 12, 2025

Running foldmason with 3Di sequence input, not PDB file

Status: Open.

#17 In steineggerlab/foldmason;

· iwilkie opened on Feb 12, 2025

A strange mistake：Error: msa2lddt died

Status: Open.

#16 In steineggerlab/foldmason;

· tzjsdss opened on Jan 20, 2025

Newick Tree file unable to open in Python or R (Malformed structure)

Status: Open.

#13 In steineggerlab/foldmason;

· parkjooyoung99 opened on Oct 14, 2024