Search results

TMAlign search and clustering with GPU slow and buggy

Status: Open.

#506 In steineggerlab/foldseek;

· mangotree3 opened on Aug 14, 2025

clust error: sequence db size != result db size

Status: Open.

#505 In steineggerlab/foldseek;

· crochereau opened on Aug 13, 2025

Can Foldseek verify whether an antibody is natural?

Status: Open.

#504 In steineggerlab/foldseek;

· 2274939692qa-beep opened on Aug 13, 2025

taxid, taxname, taxlineage all unclassified with "--gpu 1"

bugSomething isn't workingSomething isn't working

Status: Open.

#503 In steineggerlab/foldseek;

· ggavelis opened on Aug 8, 2025

IDs of clustered proteins in Alphafold/UniProt50

Status: Open.

#502 In steineggerlab/foldseek;

· ggavelis opened on Aug 8, 2025

Pairwise structural alignment of 2 pdb files

Status: Open.

#500 In steineggerlab/foldseek;

· mohammadian-reza opened on Aug 5, 2025

Search subset of accessions in web service

Status: Open.

#499 In steineggerlab/foldseek;

· aflaus opened on Aug 4, 2025

is it possible to query a protein against four different databases?

enhancementNew feature or requestNew feature or request

Status: Open.

#498 In steineggerlab/foldseek;

· mikenada02 opened on Aug 4, 2025

FoldSeek easy-search taxonomy output associated seg fault

Status: Open.

#497 In steineggerlab/foldseek;

· ilikevirusevo opened on Aug 1, 2025

Question: Recommended workflow for clustering 3Di tokens with MMseqs2

Status: Open.

#494 In steineggerlab/foldseek;

· SuperCarryDFY opened on Jul 31, 2025

Taxon specific subdb of AlphaFold/UniProt or AlphaFold/UniProt50

Status: Open.

#492 In steineggerlab/foldseek;

· draperbarr opened on Jul 26, 2025

GPU and parallelisation for beginners

Status: Open.

#491 In steineggerlab/foldseek;

· draperbarr opened on Jul 24, 2025