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146 followers · 86 following

Achievements

Achievement: Pair ExtraordinaireAchievement: Starstruckx2Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: Pair ExtraordinaireAchievement: Starstruckx2Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Organizations

@mskcc @NYU-BFX @NYU-Molecular-Pathology

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  1. Bioinformatics Public

    Bioinformatics analysis scripts, workflows, general code examples

    Shell 55 15

  2. nextflow-demos Public

    Example Nextflow pipelines and programming techniques

    Nextflow 107 26

  3. NYU-Molecular-Pathology/NGS580-nf Public

    Target exome sequencing analysis for NYU NGS580 gene panel

    Nextflow 10 5

  4. IGV-snapshot-automator Public

    Script to automatically create and run IGV snapshot batchscripts

    Python 141 50

  5. NYU-Molecular-Pathology/IR-interpreter Public

    Web app for clinical interpretation of Ion Reporter variant results

    Python 4 2

  6. mskcc/pluto-cwl Public

    CWL workflows for helix filter scripts

    Python 1 6

90 contributions in the last year

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Activity overview

Contributed to seqeralabs/seqerakit, nextflow-io/nextflow, stevekm/devcontainer-docker and 24 other repositories
Loading A graph representing stevekm's contributions from June 23, 2024 to June 24, 2025. The contributions are 51% commits, 45% issues, 4% pull requests, 0% code review.

Contribution activity

June 2025

Created 2 commits in 1 repository
Created 1 repository

Created a pull request in nf-core/scdownstream that received 5 comments

add accelerator process directive

This is a fix for the issue #192 to use GPU-enabled compute instances instances in cloud execution environments by setting the accelerator process …

+1 −0 lines changed • 5 comments

Created an issue in nextflow-io/nextflow that received 24 comments

docker.registry needs to override process.container when a registry is used in the container URI

When you define your Nextflow process with a process.container that includes a container registry in the URI, Nextflow ignores the docker.registry …

24 comments
Opened 1 other issue in 1 repository
nf-core/scdownstream 1 closed
9 contributions in private repositories Jun 10 – Jun 11
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