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@stjude-rust-labs

St. Jude Rust Labs

St. Jude's experimental Rust tools for the omics community.

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  1. fq fq Public

    Command line utility for manipulating Illumina-generated FASTQ files.

    Rust 76 5

  2. sprocket sprocket Public

    A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

    Rust 30 1

  3. wdl wdl Public

    Rust crates for working with Workflow Description Language (WDL) documents.

    Rust 26 6

  4. crankshaft crankshaft Public

    A Rust-based, headless workflow execution engine supporting local, cloud, and HPC.

    Rust 20 1

  5. sprocket-vscode sprocket-vscode Public

    Visual Studio Code extension for Sprocket (https://github.com/stjude-rust-labs/sprocket).

    TypeScript 3 1

  6. sprocket-action sprocket-action Public

    Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.

    Shell 4

Repositories

Showing 10 of 10 repositories
  • wdl Public

    Rust crates for working with Workflow Description Language (WDL) documents.

    stjude-rust-labs/wdl’s past year of commit activity
    Rust 26 Apache-2.0 6 21 (5 issues need help) 2 Updated Nov 5, 2024
  • sprocket Public

    A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

    stjude-rust-labs/sprocket’s past year of commit activity
    Rust 30 Apache-2.0 1 4 (1 issue needs help) 0 Updated Nov 1, 2024
  • sprocket-vscode Public

    Visual Studio Code extension for Sprocket (https://github.com/stjude-rust-labs/sprocket).

    stjude-rust-labs/sprocket-vscode’s past year of commit activity
    TypeScript 3 Apache-2.0 1 1 0 Updated Oct 29, 2024
  • sprocket-action Public

    Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.

    stjude-rust-labs/sprocket-action’s past year of commit activity
    Shell 4 Apache-2.0 0 0 0 Updated Oct 23, 2024
  • chainfile Public

    A crate for working with genomics chain files.

    stjude-rust-labs/chainfile’s past year of commit activity
    Rust 7 Apache-2.0 1 0 0 Updated Oct 9, 2024
  • omics Public
    stjude-rust-labs/omics’s past year of commit activity
    Rust 7 Apache-2.0 0 1 0 Updated Oct 9, 2024
  • crankshaft Public

    A Rust-based, headless workflow execution engine supporting local, cloud, and HPC.

    stjude-rust-labs/crankshaft’s past year of commit activity
    Rust 20 Apache-2.0 1 0 0 Updated Oct 5, 2024
  • tes Public

    A crate for working with the Task Execution Service (TES) specification.

    stjude-rust-labs/tes’s past year of commit activity
    Rust 4 Apache-2.0 0 0 0 Updated Sep 23, 2024
  • ngs Public

    Command line utility for working with next-generation sequencing files.

    stjude-rust-labs/ngs’s past year of commit activity
    Rust 34 Apache-2.0 2 2 2 Updated Aug 26, 2024
  • fq Public

    Command line utility for manipulating Illumina-generated FASTQ files.

    stjude-rust-labs/fq’s past year of commit activity
    Rust 76 MIT 5 5 0 Updated Jul 8, 2024

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