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Upgrade to thanos 0.32.1 #81

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subbarao-meduri
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@subbarao-meduri subbarao-meduri commented Aug 24, 2023

  • I added CHANGELOG entry for this change.
  • Change is not relevant to the end user.

Changes

TODO: Replace releaese-2.9 branch with contents o this branch

Changes:

  1. Update OWNERS file
  2. Add back COMPONENT_NAME and COMPONENT_VERSION files
  3. Add Makefile.prow, Dockerfile.prow, .prom.prow.yaml to build ubi8 based upstream images and for supporting FIPS compliant (dynamically linked) thanos binary.
  4. Add back test-kind-prow.sh to support kind testing of the upstream image in prow builds

Verification

fpetkovski and others added 30 commits April 15, 2023 08:43
Signed-off-by: GitHub <noreply@github.com>
Co-authored-by: fpetkovski <fpetkovski@users.noreply.github.com>
…s-io#6287)

* Upgrade prometheus to 7309ac272195cb856b879306d6a27af7641d3346

Signed-off-by: Alex Le <leqiyue@amazon.com>

* Reverted test code

Signed-off-by: Alex Le <leqiyue@amazon.com>

* Updated comment

Signed-off-by: Alex Le <leqiyue@amazon.com>

* docs: mismatch in changelog

Signed-off-by: Etienne Martel <etienne.martel.7@gmail.com>
Signed-off-by: Alex Le <leqiyue@amazon.com>

* Updates busybox SHA (thanos-io#6283)

Signed-off-by: GitHub <noreply@github.com>
Co-authored-by: fpetkovski <fpetkovski@users.noreply.github.com>
Signed-off-by: Alex Le <leqiyue@amazon.com>

* trigger workflow

Signed-off-by: Alex Le <leqiyue@amazon.com>

* trigger workflow

Signed-off-by: Alex Le <leqiyue@amazon.com>

---------

Signed-off-by: Alex Le <leqiyue@amazon.com>
Signed-off-by: Etienne Martel <etienne.martel.7@gmail.com>
Signed-off-by: GitHub <noreply@github.com>
Co-authored-by: Etienne Martel <etienne.martel.7@gmail.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: fpetkovski <fpetkovski@users.noreply.github.com>
Signed-off-by: naveadkazi <navead@carwale.com>
Add CarTrade Tech as new adopter
Signed-off-by: Walther Lee <walthere.lee@gmail.com>
Signed-off-by: Walther Lee <walthere.lee@gmail.com>
* Remove custom Between test matcher

The upstream PR to efficientgo/e2e has been merged, so we can use  it from there.

Signed-off-by: Douglas Camata <159076+douglascamata@users.noreply.github.com>

* Run go mod tidy

Signed-off-by: Douglas Camata <159076+douglascamata@users.noreply.github.com>

---------

Signed-off-by: Douglas Camata <159076+douglascamata@users.noreply.github.com>
Signed-off-by: Walther Lee <walthere.lee@gmail.com>
Signed-off-by: Walther Lee <walthere.lee@gmail.com>
Signed-off-by: Walther Lee <walthere.lee@gmail.com>
* Implemented native histogram support for qfe and query UI

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Fixed marshalling for histograms in qfe

Started working on native histogram query ui

Copied histogram implementation for graph

Added query range support for native histograms in qfe

Use prom model (un-)marshal for native histograms in qfe

Use prom model (un-)marshal for native histograms in qfe

Fixed sample and sample stream marshal fn

Extended qfe native histogram e2e tests

Added copyright to qfe queryrange compat

Added query range test fo histograms and try to fix ui tests

Fixed DataTable test

Review feedback

Fixed native histogram e2e test

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Add histogram support for ApplyCounterResetsSeriesIterator

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Made assets

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Add chnagelog

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Fixed changelog

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Fixed qfe

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Fixed PrometheusResponse minTime for histograms in qfe

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Updated prometheus common to v0.40.0 and queryrange.Sample fixes

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Updated Readme

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Addressed PR comments

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

trigger tests

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Made assets

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

* Made assets

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

* fixed tsdbutil references

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

* fixed imports

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

* Enabled pushdown for query native hist test and removed ToDo

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

* Refactored native histogram query UI

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

---------

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>
* store: add streamed snappy encoding for postings list

We've noticed that decoding Snappy compressed postings list
takes a lot of RAM:

```
(pprof) top
Showing nodes accounting for 1427.30GB, 67.55% of 2112.82GB total
Dropped 1069 nodes (cum <= 10.56GB)
Showing top 10 nodes out of 82
      flat  flat%   sum%        cum   cum%
         0     0%     0%  1905.67GB 90.20%  golang.org/x/sync/errgroup.(*Group).Go.func1
    2.08GB 0.098% 0.098%  1456.94GB 68.96%  github.com/thanos-io/thanos/pkg/store.(*blockSeriesClient).ExpandPostings
    1.64GB 0.078%  0.18%  1454.87GB 68.86%  github.com/thanos-io/thanos/pkg/store.(*bucketIndexReader).ExpandedPostings
    2.31GB  0.11%  0.29%  1258.15GB 59.55%  github.com/thanos-io/thanos/pkg/store.(*bucketIndexReader).fetchPostings
    1.48GB  0.07%  0.36%  1219.67GB 57.73%  github.com/thanos-io/thanos/pkg/store.diffVarintSnappyDecode
 1215.21GB 57.52% 57.87%  1215.21GB 57.52%  github.com/klauspost/compress/s2.Decode
```

This is because we are creating a new []byte slice for the decoded data
each time. To avoid this RAM usage problem, let's stream the decoding
from a given buffer. Since Snappy block format doesn't support streamed
decoding, let's switch to Snappy stream format which is made for exactly
that.

Notice that our current `index.Postings` list does not
support going back through Seek() even if theoretically one could want
something like that. Fortunately, to search for posting intersection, we
need to only go forward.

Benchmark data:

```
name                                                          time/op
PostingsEncodingDecoding/10000/raw/encode-16                  71.6µs ± 3%
PostingsEncodingDecoding/10000/raw/decode-16                  76.3ns ± 4%
PostingsEncodingDecoding/10000#01/snappy/encode-16            73.3µs ± 1%
PostingsEncodingDecoding/10000#01/snappy/decode-16            1.63µs ± 6%
PostingsEncodingDecoding/10000#02/snappyStreamed/encode-16     111µs ± 2%
PostingsEncodingDecoding/10000#02/snappyStreamed/decode-16    14.5µs ± 7%
PostingsEncodingDecoding/100000/snappyStreamed/encode-16      1.09ms ± 2%
PostingsEncodingDecoding/100000/snappyStreamed/decode-16      14.4µs ± 4%
PostingsEncodingDecoding/100000#01/raw/encode-16               710µs ± 1%
PostingsEncodingDecoding/100000#01/raw/decode-16              79.3ns ±13%
PostingsEncodingDecoding/100000#02/snappy/encode-16            719µs ± 1%
PostingsEncodingDecoding/100000#02/snappy/decode-16           13.5µs ± 4%
PostingsEncodingDecoding/1000000/raw/encode-16                7.14ms ± 1%
PostingsEncodingDecoding/1000000/raw/decode-16                81.7ns ± 9%
PostingsEncodingDecoding/1000000#01/snappy/encode-16          7.52ms ± 3%
PostingsEncodingDecoding/1000000#01/snappy/decode-16           139µs ± 4%
PostingsEncodingDecoding/1000000#02/snappyStreamed/encode-16  11.4ms ± 4%
PostingsEncodingDecoding/1000000#02/snappyStreamed/decode-16  15.5µs ± 4%

name                                                          alloc/op
PostingsEncodingDecoding/10000/raw/encode-16                  13.6kB ± 0%
PostingsEncodingDecoding/10000/raw/decode-16                   96.0B ± 0%
PostingsEncodingDecoding/10000#01/snappy/encode-16            25.9kB ± 0%
PostingsEncodingDecoding/10000#01/snappy/decode-16            11.0kB ± 0%
PostingsEncodingDecoding/10000#02/snappyStreamed/encode-16    16.6kB ± 0%
PostingsEncodingDecoding/10000#02/snappyStreamed/decode-16     148kB ± 0%
PostingsEncodingDecoding/100000/snappyStreamed/encode-16       148kB ± 0%
PostingsEncodingDecoding/100000/snappyStreamed/decode-16       148kB ± 0%
PostingsEncodingDecoding/100000#01/raw/encode-16               131kB ± 0%
PostingsEncodingDecoding/100000#01/raw/decode-16               96.0B ± 0%
PostingsEncodingDecoding/100000#02/snappy/encode-16            254kB ± 0%
PostingsEncodingDecoding/100000#02/snappy/decode-16            107kB ± 0%
PostingsEncodingDecoding/1000000/raw/encode-16                1.25MB ± 0%
PostingsEncodingDecoding/1000000/raw/decode-16                 96.0B ± 0%
PostingsEncodingDecoding/1000000#01/snappy/encode-16          2.48MB ± 0%
PostingsEncodingDecoding/1000000#01/snappy/decode-16          1.05MB ± 0%
PostingsEncodingDecoding/1000000#02/snappyStreamed/encode-16  1.47MB ± 0%
PostingsEncodingDecoding/1000000#02/snappyStreamed/decode-16   148kB ± 0%

name                                                          allocs/op
PostingsEncodingDecoding/10000/raw/encode-16                    2.00 ± 0%
PostingsEncodingDecoding/10000/raw/decode-16                    2.00 ± 0%
PostingsEncodingDecoding/10000#01/snappy/encode-16              3.00 ± 0%
PostingsEncodingDecoding/10000#01/snappy/decode-16              4.00 ± 0%
PostingsEncodingDecoding/10000#02/snappyStreamed/encode-16      4.00 ± 0%
PostingsEncodingDecoding/10000#02/snappyStreamed/decode-16      5.00 ± 0%
PostingsEncodingDecoding/100000/snappyStreamed/encode-16        4.00 ± 0%
PostingsEncodingDecoding/100000/snappyStreamed/decode-16        5.00 ± 0%
PostingsEncodingDecoding/100000#01/raw/encode-16                2.00 ± 0%
PostingsEncodingDecoding/100000#01/raw/decode-16                2.00 ± 0%
PostingsEncodingDecoding/100000#02/snappy/encode-16             3.00 ± 0%
PostingsEncodingDecoding/100000#02/snappy/decode-16             4.00 ± 0%
PostingsEncodingDecoding/1000000/raw/encode-16                  2.00 ± 0%
PostingsEncodingDecoding/1000000/raw/decode-16                  2.00 ± 0%
PostingsEncodingDecoding/1000000#01/snappy/encode-16            3.00 ± 0%
PostingsEncodingDecoding/1000000#01/snappy/decode-16            4.00 ± 0%
PostingsEncodingDecoding/1000000#02/snappyStreamed/encode-16    4.00 ± 0%
PostingsEncodingDecoding/1000000#02/snappyStreamed/decode-16    5.00 ± 0%
```

Compression ratios are still the same like previously:

```
$ /bin/go test -v -timeout 10m -run ^TestDiffVarintCodec$ github.com/thanos-io/thanos/pkg/store
[snip]
=== RUN   TestDiffVarintCodec/snappy/i!~"2.*"
    postings_codec_test.go:73: postings entries: 944450
    postings_codec_test.go:74: original size (4*entries): 3777800 bytes
    postings_codec_test.go:80: encoded size 44498 bytes
    postings_codec_test.go:81: ratio: 0.012
=== RUN   TestDiffVarintCodec/snappyStreamed/i!~"2.*"
    postings_codec_test.go:73: postings entries: 944450
    postings_codec_test.go:74: original size (4*entries): 3777800 bytes
    postings_codec_test.go:80: encoded size 44670 bytes
    postings_codec_test.go:81: ratio: 0.012
```

Signed-off-by: Giedrius Statkevičius <giedrius.statkevicius@vinted.com>

* store: clean up postings code

Signed-off-by: Giedrius Statkevičius <giedrius.statkevicius@vinted.com>

* store: fix estimation

Signed-off-by: Giedrius Statkevičius <giedrius.statkevicius@vinted.com>

* store: use buffer.Bytes()

Signed-off-by: Giedrius Statkevičius <giedrius.statkevicius@vinted.com>

* store/postings_codec: reuse extgrpc compressors/decompressors

Signed-off-by: Giedrius Statkevičius <giedrius.statkevicius@vinted.com>

* CHANGELOG: add item

Signed-off-by: Giedrius Statkevičius <giedrius.statkevicius@vinted.com>

* CHANGELOG: clean up whitespace

Signed-off-by: Giedrius Statkevičius <giedrius.statkevicius@vinted.com>

---------

Signed-off-by: Giedrius Statkevičius <giedrius.statkevicius@vinted.com>
With lots of blocks it could take some time to fill this no compact
marked map hence replace it atomically. I believe this leads to problems
in the compaction planner where it picks up no compact marked blocks
because meta syncer does synchronizations concurrently.

Signed-off-by: Giedrius Statkevičius <giedrius.statkevicius@vinted.com>
Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
…-heap-less-func

Reuse buffers for label comparison
Signed-off-by: Walther Lee <walthere.lee@gmail.com>
Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>
Signed-off-by: Philip Gough <philip.p.gough@gmail.com>
Signed-off-by: Walther Lee <walthere.lee@gmail.com>
* Replaced summary in extprom metrics with histogram

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

* Added changelog

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

* Removed unused parameters from NewInstrumentationMiddleware

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

* Reverted NewInstrumentationMiddleware

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

---------

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>
This commit exposes the label set alongside the min and max time
for each TSDB covered by a Store.

This information is used to scope the min time for a remote query
so that we do not produce partial aggregates in distriuted mode.

Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>

Cleanup

Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>
Signed-off-by: Sebastian Rabenhorst <sebastian.rabenhorst@shopify.com>
…-heap-less-func

Ignore common label-values in ProxyResponseHeap sort function
saswatamcode and others added 7 commits August 16, 2023 12:20
Signed-off-by: Saswata Mukherjee <saswataminsta@yahoo.com>
Chunk reader needs to wait until the chunk loading ends in Close()
because otherwise there will be a race between appending to r.chunkBytes
and reading from it.

Signed-off-by: Giedrius Statkevičius <giedrius.statkevicius@vinted.com>
Signed-off-by: Saswata Mukherjee <saswataminsta@yahoo.com>
Signed-off-by: Saswata Mukherjee <saswataminsta@yahoo.com>
* store: fix missing flush when handling pushed down queries (thanos-io#6612)

In the case that we have pushed down queries and internal labels that
are overriden by external labels we are not flushing the sorted response.

Signed-off-by: Michael Hoffmann <mhoffm@posteo.de>

* Cut release candidate v0.32.0-rc.1

Signed-off-by: Saswata Mukherjee <saswataminsta@yahoo.com>

---------

Signed-off-by: Michael Hoffmann <mhoffm@posteo.de>
Signed-off-by: Saswata Mukherjee <saswataminsta@yahoo.com>
Co-authored-by: Michael Hoffmann <mhoffm@posteo.de>
* queryfrontend: fix explanation with query_range (thanos-io#6633)

Signed-off-by: Saswata Mukherjee <saswataminsta@yahoo.com>

* Cut final release candidate for v0.32.0

Signed-off-by: Saswata Mukherjee <saswataminsta@yahoo.com>

---------

Signed-off-by: Saswata Mukherjee <saswataminsta@yahoo.com>
Co-authored-by: Giedrius Statkevičius <giedrius.statkevicius@vinted.com>
Signed-off-by: Subbarao Meduri <smeduri@redhat.com>
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/retest

Signed-off-by: Subbarao Meduri <smeduri@redhat.com>
subbarao-meduri and others added 5 commits August 25, 2023 02:32
Signed-off-by: Subbarao Meduri <smeduri@redhat.com>
Signed-off-by: Subbarao Meduri <smeduri@redhat.com>
* store: fix error handling in decodePostings (thanos-io#6650)

Signed-off-by: Michael Hoffmann <mhoffm@posteo.de>

* store: fix ignored error in postings (thanos-io#6654)

Signed-off-by: Michael Hoffmann <mhoffm@posteo.de>

* Store: fix bufio pool handling (thanos-io#6655)

Signed-off-by: Michael Hoffmann <mhoffm@posteo.de>

* Fix mutable stringset memory usage (thanos-io#6669)

This commit fixes the Insert function for the mutable stringset
to only insert unique labels instead of adding every label to the set.

Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>

* Cut patch release v0.32.1

Signed-off-by: Saswata Mukherjee <saswataminsta@yahoo.com>

---------

Signed-off-by: Michael Hoffmann <mhoffm@posteo.de>
Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
Signed-off-by: Saswata Mukherjee <saswataminsta@yahoo.com>
Co-authored-by: Michael Hoffmann <mhoffm@posteo.de>
Co-authored-by: Filip Petkovski <filip.petkovsky@gmail.com>
v0.32.1

Signed-off-by: Subbarao Meduri <smeduri@redhat.com>
Signed-off-by: Subbarao Meduri <smeduri@redhat.com>
@subbarao-meduri subbarao-meduri changed the title Upgrade to thanos 0.32.0 Upgrade to thanos 0.32.1 Aug 29, 2023
Signed-off-by: Subbarao Meduri <smeduri@redhat.com>
@bjoydeep
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bjoydeep commented Sep 7, 2023

/lgtm

@openshift-ci openshift-ci bot added the lgtm label Sep 7, 2023
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openshift-ci bot commented Sep 7, 2023

[APPROVALNOTIFIER] This PR is APPROVED

This pull-request has been approved by: bjoydeep, subbarao-meduri

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@subbarao-meduri subbarao-meduri merged commit b33e30b into stolostron:release-2.9 Sep 7, 2023
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