su2code · pcarruscag · Jan 20, 2021 · Dec 11, 2020 · Dec 11, 2020 · Dec 11, 2020
diff --git a/.gitignore b/.gitignore
@@ -87,4 +87,6 @@ Mercurial
 # Ignore build folder
 ./build/
 build/
+
+# ninja binary (build system)
 ninja
diff --git a/.gitmodules b/.gitmodules
@@ -12,3 +12,6 @@
 [submodule "externals/meson"]
 	path = externals/meson
 	url = https://github.com/mesonbuild/meson
+[submodule "subprojects/Mutationpp"]
+        path = subprojects/Mutationpp
+        url = https://github.com/mutationpp/Mutationpp.git	
diff --git a/Common/doc/docmain.hpp b/Common/doc/docmain.hpp
@@ -2,7 +2,7 @@
  * \file docmain.hpp
  * \brief This file contains documentation for Doxygen and does not have any significance with respect to C++.
  * \author F. Palacios
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * The current SU2 release has been coordinated by the
  * SU2 International Developers Society <www.su2devsociety.org>
@@ -33,7 +33,7 @@
  */
 
 /*! 
- * \mainpage SU2 version 7.0.8 "Blackbird"
+ * \mainpage SU2 version 7.1.0 "Blackbird"
  * SU2 suite is an open-source collection of C++ based software tools
  * to perform PDE analysis and PDE constrained optimization problems.  The toolset is designed with 
  * computational fluid dynamics and aerodynamic shape optimization in mind, but is extensible to

diff --git a/Common/include/CConfig.hpp b/Common/include/CConfig.hpp
diff --git a/Common/include/adt/CADTBaseClass.hpp b/Common/include/adt/CADTBaseClass.hpp
@@ -2,7 +2,7 @@
  * \file CADTBaseClass.hpp
  * \brief Base class for storing an ADT in an arbitrary number of dimensions.
  * \author E. van der Weide
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *
@@ -32,7 +32,7 @@
 
 #include "../basic_types/datatype_structure.hpp"
 #include "./CADTNodeClass.hpp"
-#include "../omp_structure.hpp"
+#include "../parallelization/omp_structure.hpp"
 
 using namespace std;
 

diff --git a/Common/include/adt/CADTComparePointClass.hpp b/Common/include/adt/CADTComparePointClass.hpp
@@ -2,7 +2,7 @@
  * \file CADTComparePointClass.hpp
  * \brief subroutines for comparing two points in an alternating digital tree (ADT).
  * \author E. van der Weide
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *

diff --git a/Common/include/adt/CADTElemClass.hpp b/Common/include/adt/CADTElemClass.hpp
@@ -2,7 +2,7 @@
  * \file CADTElemClass.hpp
  * \brief Class for storing an ADT of (linear) elements in an arbitrary number of dimensions.
  * \author E. van der Weide
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *
@@ -29,13 +29,13 @@
 
 #include "./CADTBaseClass.hpp"
 #include "./CBBoxTargetClass.hpp"
-#include "../omp_structure.hpp"
+#include "../parallelization/omp_structure.hpp"
 
 /*!
  * \class CADTElemClass
  * \brief  Class for storing an ADT of (linear) elements in an arbitrary number of dimensions.
  * \author E. van der Weide
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  */
 class CADTElemClass : public CADTBaseClass {
 private:
@@ -400,4 +400,4 @@ class CADTElemClass : public CADTBaseClass {
    */
   CADTElemClass() = delete;
 
-};
+};
diff --git a/Common/include/adt/CADTNodeClass.hpp b/Common/include/adt/CADTNodeClass.hpp
@@ -2,7 +2,7 @@
  * \file CADTNodeClass.hpp
  * \brief Class for storing the information needed in a node of an ADT.
  * \author E. van der Weide
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *

diff --git a/Common/include/adt/CADTPointsOnlyClass.hpp b/Common/include/adt/CADTPointsOnlyClass.hpp
@@ -2,7 +2,7 @@
  * \file CADTPointsOnlyClass.hpp
  * \brief Class for storing an ADT of only points in an arbitrary number of dimensions.
  * \author E. van der Weide
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *

diff --git a/Common/include/adt/CBBoxTargetClass.hpp b/Common/include/adt/CBBoxTargetClass.hpp
@@ -3,7 +3,7 @@
  * \brief Class for storing the information of a possible bounding box candidate
            during a minimum distance search.
  * \author E. van der Weide
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *
@@ -34,7 +34,7 @@
  * \brief  Class for storing the information of a possible bounding box candidate
            during a minimum distance search.
  * \author E. van der Weide
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  */
 struct CBBoxTargetClass {
 

diff --git a/Common/include/basic_types/ad_structure.hpp b/Common/include/basic_types/ad_structure.hpp
@@ -2,7 +2,7 @@
  * \file ad_structure.hpp
  * \brief Main routines for the algorithmic differentiation (AD) structure.
  * \author T. Albring
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *

diff --git a/Common/include/basic_types/datatype_structure.hpp b/Common/include/basic_types/datatype_structure.hpp
@@ -2,7 +2,7 @@
  * \file datatype_structure.hpp
  * \brief Headers for generalized datatypes, defines an interface for AD types.
  * \author T. Albring
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *

diff --git a/Common/include/blas_structure.hpp b/Common/include/blas_structure.hpp
diff --git a/Common/include/containers/C2DContainer.hpp b/Common/include/containers/C2DContainer.hpp
@@ -2,7 +2,7 @@
  * \file C2DContainer.hpp
  * \brief A templated vector/matrix object.
  * \author P. Gomes
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *
@@ -613,7 +613,8 @@ class C2DContainer :
  * \brief Useful typedefs with default template parameters
  */
 template<class T> using su2vector = C2DContainer<unsigned long, T, StorageType::ColumnMajor, 64, DynamicSize, 1>;
-template<class T> using su2matrix = C2DContainer<unsigned long, T, StorageType::RowMajor, 64, DynamicSize, DynamicSize>;
+template<class T> using su2matrix = C2DContainer<unsigned long, T, StorageType::RowMajor,    64, DynamicSize, DynamicSize>;
+template<class T> using ColMajorMatrix = C2DContainer<unsigned long, T, StorageType::ColumnMajor, 64, DynamicSize, DynamicSize>;
 
 using su2activevector = su2vector<su2double>;
 using su2activematrix = su2matrix<su2double>;

diff --git a/Common/include/containers/CFastFindAndEraseQueue.hpp b/Common/include/containers/CFastFindAndEraseQueue.hpp
@@ -3,7 +3,7 @@
  * \brief A queue-type container (push back, pop front), but with
  *        fast deletion of arbitrary items (possibly in the middle).
  * \author P. Gomes
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *

diff --git a/Common/include/containers/CVertexMap.hpp b/Common/include/containers/CVertexMap.hpp
@@ -2,7 +2,7 @@
  * \file CVertexMap.hpp
  * \brief An index to index lookup vector.
  * \author P. Gomes
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *

diff --git a/Common/include/containers/container_decorators.hpp b/Common/include/containers/container_decorators.hpp
@@ -3,7 +3,7 @@
  * \brief Collection of small classes that decorate C2DContainer to
  * augment its functionality, e.g. give it extra dimensions.
  * \author P. Gomes
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *

diff --git a/Common/include/fem/fem_cgns_elements.hpp b/Common/include/fem/fem_cgns_elements.hpp
@@ -4,7 +4,7 @@
  *        with high order elements.
  *        The functions are in the <i>cgns_elements.cpp</i> file.
  * \author E. van der Weide
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *
@@ -29,7 +29,7 @@
 
 #pragma once
 
-#include "../mpi_structure.hpp"
+#include "../parallelization/mpi_structure.hpp"
 
 #ifdef HAVE_CGNS
   #include "cgnslib.h"
@@ -47,7 +47,7 @@ class CBoundaryFace;
  * \class CCGNSElementType
  * \brief Class which stores the CGNS element type info for a connectivity
           section.
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  */
 
 class CCGNSElementType {

diff --git a/Common/include/fem/fem_gauss_jacobi_quadrature.hpp b/Common/include/fem/fem_gauss_jacobi_quadrature.hpp
@@ -6,7 +6,7 @@
           All the functions in this class are based on the program JACOBI_RULE
           of John Burkardt.
  * \author E. van der Weide
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  *
  * SU2 Project Website: https://su2code.github.io
  *
@@ -95,7 +95,7 @@ using namespace std;
  * \brief Class used to determine the quadrature points of the Gauss Jacobi
           integration rules.
  * \author E. van der Weide
- * \version 7.0.8 "Blackbird"
+ * \version 7.1.0 "Blackbird"
  */
 class CGaussJacobiQuadrature {
 public: