chore(biome): update Biome to version 1.9.3

Updated Biome from version 1.8.3 to 1.9.3 to address dependencies.
Also refactored biome.json formatting for better readability.

Signed-off-by: Giovanni Ravalico <15946771+suddenlyGiovanni@users.noreply.github.com>

biome.json

@@ -1,8 +1,14 @@
 {
 	"$schema": "./node_modules/@biomejs/biome/configuration_schema.json",
 	"files": {
-		"include": ["./src"],
-		"ignore": ["node_modules", ".pnpm", "./~"]
+		"include": [
+			"./src"
+		],
+		"ignore": [
+			"node_modules",
+			".pnpm",
+			"./~"
+		]
 	},
 	"vcs": {
 		"enabled": true,
@@ -24,8 +30,7 @@
 		"rules": {
 			"all": true,
 			"nursery": {
-				"all": true,
-				"noUndeclaredDependencies": "off"
+				"all": true
 			},
 			"style": {
 				"noNamespaceImport": {
@@ -63,13 +68,17 @@
 	},
 	"overrides": [
 		{
-			"include": ["**/*.snapshot.json"],
+			"include": [
+				"**/*.snapshot.json"
+			],
 			"formatter": {
 				"enabled": false
 			}
 		},
 		{
-			"include": ["src/test/test-utils.ts"],
+			"include": [
+				"src/test/test-utils.ts"
+			],
 			"linter": {
 				"rules": {
 					"suspicious": {

package.json

@@ -44,7 +44,7 @@
 		"@effect/schema": "~0.72.2"
 	},
 	"devDependencies": {
-		"@biomejs/biome": "1.8.3",
+		"@biomejs/biome": "1.9.3",
 		"@changesets/cli": "2.27.8",
 		"@effect/schema": "0.72.2",
 		"@std/yaml": "npm:@jsr/std__yaml@1.0.5",