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Updates from package template #249

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Dec 7, 2024
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8 changes: 7 additions & 1 deletion .cruft.json
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"template": "https://github.com/sunpy/package-template",
"commit": "cd21e0d710513a891ed03f29e8afd6e0b9217f04",
"commit": "3737aa309d2a695ada046c7868c5683213003f3d",
"checkout": null,
"context": {
"cookiecutter": {
Expand All @@ -10,6 +10,12 @@
"author_name": "The SunPy Community",
"author_email": "sunpy@googlegrouups.com",
"project_url": "https://sunpy.org",
"github_repo": "",
"sourcecode_url": "",
"download_url": "https://pypi.org/project/sunkit-image",
"documentation_url": "",
"changelog_url": "",
"issue_tracker_url": "",
"license": "BSD 2-Clause",
"minimum_python_version": "3.10",
"use_compiled_extensions": "n",
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12 changes: 6 additions & 6 deletions .github/workflows/ci.yml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@

# Main CI Workflow
name: CI

on:
Expand All @@ -22,7 +22,7 @@ concurrency:

jobs:
core:
uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@v1
with:
submodules: false
coverage: codecov
Expand All @@ -46,7 +46,7 @@ jobs:

test:
needs: [core, sdist_verify]
uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@v1
with:
submodules: false
coverage: codecov
Expand All @@ -61,7 +61,7 @@ jobs:

docs:
needs: [core]
uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@v1
with:
default_python: '3.12'
submodules: false
Expand All @@ -76,7 +76,7 @@ jobs:
online:
if: "!startsWith(github.event.ref, 'refs/tags/v')"
needs: [test]
uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@v1
with:
default_python: '3.12'
submodules: false
Expand Down Expand Up @@ -135,7 +135,7 @@ jobs:
contains(github.event.pull_request.labels.*.name, 'Run publish')
)
needs: [test, docs]
uses: OpenAstronomy/github-actions-workflows/.github/workflows/publish_pure_python.yml@main
uses: OpenAstronomy/github-actions-workflows/.github/workflows/publish_pure_python.yml@v1
with:
python-version: '3.12'
test_extras: 'tests'
Expand Down
2 changes: 1 addition & 1 deletion .pre-commit-config.yaml
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
repos:
- repo: https://github.com/astral-sh/ruff-pre-commit
rev: "v0.7.4"
rev: "v0.8.1"
hooks:
- id: ruff
args: ["--fix"]
Expand Down
1 change: 0 additions & 1 deletion .ruff.toml
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,6 @@ extend-ignore = [
"UP038", # Use | in isinstance - not compatible with models and is slower
# pytest (PT)
"PT001", # Always use pytest.fixture()
"PT004", # Fixtures which don't return anything should have leading _
"PT023", # Always use () on pytest decorators
# flake8-pie (PIE)
"PIE808", # Disallow passing 0 as the first argument to range
Expand Down
10 changes: 0 additions & 10 deletions docs/changelog.rst

This file was deleted.

8 changes: 4 additions & 4 deletions docs/conf.py
Original file line number Diff line number Diff line change
Expand Up @@ -49,20 +49,20 @@

extensions = [
"matplotlib.sphinxext.plot_directive",
"sphinx_automodapi.automodapi",
"sphinx_automodapi.smart_resolver",
"sphinx_changelog",
"sphinx_design",
"sphinx_gallery.gen_gallery",
"sphinx.ext.autodoc",
"sphinx.ext.coverage",
"sphinx.ext.doctest",
"sphinx.ext.inheritance_diagram",
"sphinx.ext.intersphinx",
"sphinx.ext.mathjax",
"sphinx.ext.napoleon",
"sphinx.ext.todo",
"sphinx.ext.viewcode",
"sphinx.ext.mathjax",
"sphinx_automodapi.automodapi",
"sphinx_automodapi.smart_resolver",
"sphinx_changelog",
]

# Add any paths that contain templates here, relative to this directory.
Expand Down
2 changes: 1 addition & 1 deletion docs/index.rst
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ sunkit-image
:maxdepth: 1

generated/gallery/index
changelog
whatsnew/index

Mission Statement
=================
Expand Down
10 changes: 10 additions & 0 deletions docs/whatsnew/changelog.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
.. _changelog:

**************
Full Changelog
**************

.. changelog::
:towncrier: ../../
:towncrier-skip-if-empty:
:changelog_file: ../../CHANGELOG.rst
12 changes: 12 additions & 0 deletions docs/whatsnew/index.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
.. _whatsnew:

***************
Release History
***************

This page documents the releases for sunkit-image

.. toctree::
:maxdepth: 1

changelog
114 changes: 55 additions & 59 deletions pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -54,13 +54,13 @@ tests = [
docs = [
"sphinx",
"sphinx-automodapi",
"sphinx-changelog",
"sunpy-sphinx-theme",
"packaging",
"sunkit_image[all]",
"astroscrappy",
"dask",
"matplotlib",
"sphinx-changelog",
"sphinx-design",
"sphinx-gallery",
"sunpy[data,net]>=6.0.0",
Expand Down Expand Up @@ -88,63 +88,59 @@ namespaces = false
[tool.setuptools_scm]
write_to = "sunkit_image/_version.py"

[ tool.gilesbot ]
[ tool.gilesbot.circleci_artifacts ]
enabled = true

[ tool.gilesbot.pull_requests ]
enabled = true

[ tool.gilesbot.towncrier_changelog ]
enabled = true
verify_pr_number = true
changelog_skip_label = "No Changelog Entry Needed"
help_url = "https://github.com/sunpy/sunkit-image/blob/main/changelog/README.rst"

changelog_missing_long = "There isn't a changelog file in this pull request. Please add a changelog file to the `changelog/` directory following the instructions in the changelog [README](https://github.com/sunpy/sunkit-image/blob/main/changelog/README.rst)."

type_incorrect_long = "The changelog file you added is not one of the allowed types. Please use one of the types described in the changelog [README](https://github.com/sunpy/sunkit-image/blob/main/changelog/README.rst)"

number_incorrect_long = "The number in the changelog file you added does not match the number of this pull request. Please rename the file."

[tool.gilesbot]
[tool.gilesbot.pull_requests]
enabled = true

[tool.gilesbot.towncrier_changelog]
enabled = true
verify_pr_number = true
changelog_skip_label = "No Changelog Entry Needed"
help_url = "https://github.com/sunpy/sunkit-image/blob/main/changelog/README.rst"
changelog_missing_long = "There isn't a changelog file in this pull request. Please add a changelog file to the `changelog/` directory following the instructions in the changelog [README](https://github.com//blob/main/changelog/README.rst)."
type_incorrect_long = "The changelog file you added is not one of the allowed types. Please use one of the types described in the changelog [README](https://github.com//blob/main/changelog/README.rst)"
number_incorrect_long = "The number in the changelog file you added does not match the number of this pull request. Please rename the file."

# TODO: This should be in towncrier.toml but Giles currently only works looks in
# pyproject.toml we should move this back when it's fixed.
[tool.towncrier]
package = "sunkit_image"
filename = "CHANGELOG.rst"
directory = "changelog/"
package = "sunkit_image"
filename = "CHANGELOG.rst"
directory = "changelog/"
issue_format = "`#{issue} <https://github.com/sunpy/sunkit-image/pull/{issue}>`__"
title_format = "{version} ({project_date})"

[[tool.towncrier.type]]
directory = "breaking"
name = "Backwards Incompatible Changes"
showcontent = true

[[tool.towncrier.type]]
directory = "api"
name = "API Changes"
showcontent = true

[[tool.towncrier.type]]
directory = "removal"
name = "Deprecations and Removals"
showcontent = true

[[tool.towncrier.type]]
directory = "feature"
name = "Features"
showcontent = true

[[tool.towncrier.type]]
directory = "bugfix"
name = "Bug Fixes"
showcontent = true

[[tool.towncrier.type]]
directory = "doc"
name = "Improved Documentation"
showcontent = true

[[tool.towncrier.type]]
directory = "trivial"
name = "Trivial/Internal Changes"
showcontent = true
title_format = "{version} ({project_date})"

[[tool.towncrier.type]]
directory = "breaking"
name = "Breaking Changes"
showcontent = true

[[tool.towncrier.type]]
directory = "deprecation"
name = "Deprecations"
showcontent = true

[[tool.towncrier.type]]
directory = "removal"
name = "Removals"
showcontent = true

[[tool.towncrier.type]]
directory = "feature"
name = "New Features"
showcontent = true

[[tool.towncrier.type]]
directory = "bugfix"
name = "Bug Fixes"
showcontent = true

[[tool.towncrier.type]]
directory = "doc"
name = "Documentation"
showcontent = true

[[tool.towncrier.type]]
directory = "trivial"
name = "Internal Changes"
showcontent = true
10 changes: 5 additions & 5 deletions sunkit_image/asda.py
Original file line number Diff line number Diff line change
Expand Up @@ -12,14 +12,14 @@
from sunkit_image.utils import calculate_gamma, points_in_poly, reform2d, remove_duplicate

__all__ = [
"generate_velocity_field",
"calculate_gamma_values",
"get_vortex_edges",
"get_vortex_properties",
"get_vortex_meshgrid",
"get_rotational_velocity",
"generate_velocity_field",
"get_radial_velocity",
"get_rotational_velocity",
"get_velocity_field",
"get_vortex_edges",
"get_vortex_meshgrid",
"get_vortex_properties",
]


Expand Down
4 changes: 2 additions & 2 deletions sunkit_image/coalignment.py
Original file line number Diff line number Diff line change
Expand Up @@ -18,10 +18,10 @@
from sunpy.util.exceptions import SunpyUserWarning

__all__ = [
"match_template_to_layer",
"apply_shifts",
"mapsequence_coalign_by_match_template",
"calculate_match_template_shift",
"mapsequence_coalign_by_match_template",
"match_template_to_layer",
]


Expand Down
7 changes: 4 additions & 3 deletions sunkit_image/conftest.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@
import tempfile
import warnings
import importlib.util
from pathlib import Path

import numpy as np
import pytest
Expand Down Expand Up @@ -48,8 +49,8 @@ def _tmp_config_dir(request):
tmpdir = tempfile.TemporaryDirectory()

os.environ["SUNPY_CONFIGDIR"] = str(tmpdir.name)
astropy.config.paths.set_temp_config._temp_path = str(tmpdir.name)
astropy.config.paths.set_temp_cache._temp_path = str(tmpdir.name)
astropy.config.paths.set_temp_config._temp_path = Path(tmpdir.name)
astropy.config.paths.set_temp_cache._temp_path = Path(tmpdir.name)

yield

Expand Down Expand Up @@ -77,7 +78,7 @@ def tmp_dl_dir(request):
"""
with tempfile.TemporaryDirectory() as tmpdir:
os.environ["SUNPY_DOWNLOADDIR"] = tmpdir
yield tmpdir
yield Path(tmpdir)
del os.environ["SUNPY_DOWNLOADDIR"]


Expand Down
2 changes: 1 addition & 1 deletion sunkit_image/tests/helpers.py
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@
import sunpy
from sunpy.tests.helpers import skip_windows

__all__ = ["get_hash_library_name", "figure_test", "skip_windows"]
__all__ = ["figure_test", "get_hash_library_name", "skip_windows"]


def get_hash_library_name():
Expand Down
2 changes: 1 addition & 1 deletion sunkit_image/trace.py
Original file line number Diff line number Diff line change
Expand Up @@ -9,8 +9,8 @@
from sunkit_image.utils.decorators import accept_array_or_map

__all__ = [
"occult2",
"bandpass_filter",
"occult2",
"smooth",
]

Expand Down
2 changes: 1 addition & 1 deletion sunkit_image/utils/noise.py
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
from scipy.stats import gamma
from skimage.util import view_as_windows

__all__ = ["noise_estimation", "noiselevel", "conv2d_matrix", "weak_texture_mask"]
__all__ = ["conv2d_matrix", "noise_estimation", "noiselevel", "weak_texture_mask"]


def noise_estimation(img, patchsize=7, decim=0, confidence=1 - 1e-6, iterations=3):
Expand Down
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