feat(neuroml): refer to neuro_lex_ids in neuroml instead of hard coding

suny-downstate-medical-center · Sep 11, 2024 · 6c9b0d4 · 6c9b0d4
1 parent 3b79d06
commit 6c9b0d4
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/netpyne/conversion/neuromlFormat.py b/netpyne/conversion/neuromlFormat.py
@@ -23,6 +23,7 @@
 
 try:
     import neuroml
+    from neuroml.neuro_lex_ids import neuro_lex_ids
     from pyneuroml import pynml
     from pyneuroml import __version__ as pynml_ver
     from distutils.version import StrictVersion
@@ -1354,7 +1355,7 @@ def handle_population(
                     # Unbranched segment group -> NEURON section
                     if (
                         hasattr(seg_grp, "neuro_lex_id")
-                        and seg_grp.neuro_lex_id == "sao864921383"
+                        and seg_grp.neuro_lex_id == neuro_lex_ids["section"]
                     ):
                         use_segment_groups_for_neuron = True
                         cellRule["secs"][seg_grp.id] = {
@@ -1524,7 +1525,7 @@ def handle_population(
 
                     if (
                         not seg_grp.neuro_lex_id
-                        or seg_grp.neuro_lex_id != "sao864921383"
+                        or seg_grp.neuro_lex_id != neuro_lex_ids["section"]
                     ):
                         cellRule["secLists"][seg_grp.id] = seg_grps_vs_nrn_sections[
                             seg_grp.id