Write Igor Binary Wave (.ibw) or Igor Text (.itx) files from numpy array
- Compatible with multi-dimensional arrays (up to 4 dimensions)
- Supported
numpy
data types: uint, int, float, complex, bool, str, bytes, datetime64 - Data units (
IgorWave.set_datascale
) - Dimension scaling (
IgorWave.set_dimscale
) - Dimension labels (
IgorWave.set_dimlabel
) - Wave notes (
IgorWave.set_note
) - Dependency formula (
IgorWave.set_formula
)
From PyPI:
$ pip install igorwriter
Or from conda-forge:
$ conda install conda-forge::igorwriter
Basic usage
import numpy as np
from igorwriter import IgorWave
array = np.array([1,2,3,4,5,6])
# make IgorWave objects
wave = IgorWave(array, name='mywave')
wave2 = IgorWave(array.astype(np.float32), name='mywave2')
# save data
wave.save('mywave.ibw')
wave.save_itx('mywave.itx')
with open('multi_waves.itx', 'w') as fp:
# Igor Text files can contain multiples waves per file
wave.save_itx(fp)
wave2.save_itx(fp)
Data units, dimension scaling
wave.set_datascale('DataUnit')
wave.set_dimscale('x', 0, 0.01, 's')
A two-dimensional array with dimension labels
a2 = np.random.random((10, 3))
wave = IgorWave(a2, name='wave2d')
# you may set optional dimension labels
wave.set_dimlabel(0, -1, 'points') # label for entire rows
wave.set_dimlabel(1, -1, 'values') # label for entire columns
wave.set_dimlabel(1, 0, 'ValueA') # label for column 0
wave.set_dimlabel(1, 1, 'ValueB') # label for column 1
wave.set_dimlabel(1, 2, 'ValueC') # label for column 2
wave.save('my2dwave.ibw')
You can append arbitrary Igor commands to Igor Text files.
wave = IgorWave([1, 4, 9], name='wave0')
with open('wave0.itx', 'w') as fp:
wave.save_itx(fp)
fp.write("X Display 'wave0'\n")
From igorwriter 0.5.0, IgorWave stores texts with utf-8 encoding. If you
use Igor Pro 6 or older and want to use non-ascii characters, set
unicode=False
when calling IgorWave()
. It will fall back to system
text encoding (Windows-1252, Shift JIS, etc.).
There are restrictions on object names in IGOR. From v0.2.0, this package deals with illegal object names.
# This will issue a RenameWarning, and the name will be automatically changed.
wave = IgorWave(array, name='wave:0', on_errors='fix')
print(wave.name) # wave_0
# This will raise an InvalidNameError.
wave = IgorWave(array, name='wave:0', on_errors='raise')
Igor Pro 8.0+ supports wave names with more than 31 bytes. To support longer wave names,
please set long_name_support=True
when calling IgorWave()
. Note that setting long_name_support=True
breaks backward compatibility for older Igor Pro regardless of the actual name length.
If Pint Quantity objects are passed to IgorWave, data units will be set automatically.
import pint
ureg = pint.UnitRegistry()
w = IgorWave([3, 4] * ureg.meter / ureg.second, name='wave_with_units')
w.save_itx('wave_with_units.itx')
print(open('wave_with_units.itx', 'r').read())
# ...
# X SetScale d,0,0,"m / s",'wave_with_units'
# X SetScale /P x,0.0,1.0,"",'wave_with_units'
You can easily export DataFrame objects with convenience functions.
from igorwriter import utils
utils.dataframe_to_itx(df, 'df.itx') # all Series are exported in one file
waves = utils.dataframe_to_ibw(df, prefix='df_bin') # each Series is saved in a separate file, <prefix>_<column>.ibw
print(waves) # dictionary of generated IgorWaves
# {'col1': <IgorWave 'col1' at 0x...>, 'col2': ...}
IgorWriter tries to convert index info on pandas.Series
objects in following manners.
- If the index is evenly-spaced, wave dimension scaling is set accordingly.
- Index names are interpreted as the dimension labels.
Image Plot in IGOR and imshow
in matplotlib use different convention
for x and y axes:
- Rows as x, columns as y (IGOR)
- Columns as x, rows as y (Matplotlib)
Thus, image
parameter was introduced in save()
and save_itx()
methods. If you use e.g.
wave.save('path.ibw', image=True)
plt.imshow
and Image Plot will give the same results.
The image=True
option transposes rows and columns of the underlying
array, but does not swap data units, dimension scaling, etc. (You need to
change them manually).
- Added support for Long Name Objects (wave names with more than 31 bytes).
- Wave note support
- Dependency formula support
- UTF-8 as default encoding. You can instead use system text encoding
by setting
unicode=False
to IgorWave(). - Automatic conversion from pandas index to dimension scaling.
- Exporting 64-bit integer waves (requires Igor Pro 7 or later).
- BUG FIX: Igor Text files created from
np.bool_
arrays were broken.
- Added support for
np.str_
andnp.bytes_
arrays. - Automatic type conversion for
np.object_
arrays. - Added support for dimension scaling (
IgorWave.set_simlabel
).
- Added
utils.dict_to_{ibw, itx}
- Set datascale automatically for pint Quantity object.
- Added support for np.datetime64 array.
- Added support for 64-bit integers (by automatically casting onto 32-bit integers on save).
- Added utilities for pandas (
utils.dataframe_to_{ibw, itx}
). - Added unittest scripts.
- Added wave name validator.
- BUG FIX: long (> 3 bytes) units for dimension scaling were ignored in save_itx()
- IgorWriter now uses system locale encoding rather than ASCII (the default behavior of IGOR Pro prior to ver. 7.00)