branches_lwd does not work - thick branches by default

[juliagcurras]

Hello,

I have been using the heatmaply function all this week. Everything worked fine until yesterday, when the figures started to show very thick branches. I tried to used the branches_lwd argument, but nothing happened. I suppose it is something related with some package update, maybe the plotly one, but I can't find I way to fix it.

It does not matter which type of data I use, I always get the thick branches. If I open RStudio, with the empty enviroment, and I run:

heatmaply::heatmaply(iris)

I get the following image:

If I try to use the branches_lwd argument, everythin remains the same:

heatmaply::heatmaply(iris, branches_lwd = 0.2)

Even with the examples on the documentation, the output is the same.

What I expected to happen:

Other information: R version 4.4.1; plotly version 4.10.4; heatmaply version 1.50; dendextend version 1.18.0.

Thank you in advance for your help!

PD: I've just installed the 1.17.1 version of dendextend and I can get again the normal thick of dendrogram branches.

Julia

[talgalili]

Hi, dendextend was recently updated. Could you please install the older 1.17 version?

…

On Thu, 10 Oct 2024, 11:20 Julia G Currás, ***@***.***> wrote: Hello, I have been using the heatmaply function all this week. Everything worked fine until yesterday, when the figures started to show very thick branches. I tried to used the branches_lwd argument, but nothing happened. I suppose it is something related with some package update, maybe the plotly one, but I can't find I way to fix it. It does not matter which type of data I use, I always get the thick branches. If I open RStudio, with the empty enviroment, and I run: heatmaply::heatmaply(iris) I get the following image: branches1.png (view on web) <https://github.com/user-attachments/assets/a348b8a7-a076-4c8a-bb9f-183b10135a3f> If I try to use the branches_lwd argument, everythin remains the same: heatmaply::heatmaply(iris, branches_lwd = 0.2) branches_0.2.png (view on web) <https://github.com/user-attachments/assets/eaccc5d9-da9b-4ecc-8b2c-e76018d6b590> Even with the examples on the documentation, the output is the same. What I expected to happen: image.png (view on web) <https://github.com/user-attachments/assets/d8c1c880-868f-4026-b6d7-ca62fd4224f9> Other information: R version 4.4.1; plotly version 4.10.4; heatmaply version 1.50; dendextend version 1.18.0. Thank you in advance for your help! Julia — Reply to this email directly, view it on GitHub <#309>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAHOJBUCZGYY7ZY4RCJADSTZ2Y2GNAVCNFSM6AAAAABPWGVBOCVHI2DSMVQWIX3LMV43ASLTON2WKOZSGU3TQMBVGAZDINI> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[juliagcurras]

Hi, I've just installed the 1.17.1 version of dendextend and I can get again the normal thick of dendrogram branches, so I suppose it is a problem of this new updated.

Thank you so much for your quickly answer!
Julia

[talgalili]

🙏 Thanks. I'll take a look in the coming days.

…

On Thu, 10 Oct 2024, 14:10 Julia G Currás, ***@***.***> wrote: Hi, I've just installed the 1.17.1 version of dendextend and I can get again the normal thick of dendrogram branches, so I suppose it is a problem of this new updated. Thank you so much for your quickly answer! Julia — Reply to this email directly, view it on GitHub <#309 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAHOJBRHWNIWNAGPHAGVFBDZ2ZOBPAVCNFSM6AAAAABPWGVBOCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDIMBUG44TQNRXHE> . You are receiving this because you commented.Message ID: ***@***.***>

[talgalili]

This is now fixed on dendextend 1.18.1

talgalili/dendextend#126