LitData Refactor PR1: Get individual functions for data pipelines

[gitttt-1234]

This is the first PR for #80. Here, we breakdown the operations in iter() of all data processing modules into individual functions that would be useful for implementing the get_chunks() (second PR for #80 ).

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Commits

Files that changed from the base of the PR and between 3631666 and 7489622.

Files selected for processing (51)

• docs/config.md (3 hunks)
• docs/config_bottomup.yaml (3 hunks)
• docs/config_centroid.yaml (3 hunks)
• docs/config_topdown_centered_instance.yaml (3 hunks)
• sleap_nn/architectures/model.py (2 hunks)
• sleap_nn/data/augmentation.py (8 hunks)
• sleap_nn/data/confidence_maps.py (1 hunks)
• sleap_nn/data/edge_maps.py (1 hunks)
• sleap_nn/data/instance_centroids.py (3 hunks)
• sleap_nn/data/instance_cropping.py (3 hunks)
• sleap_nn/data/normalization.py (1 hunks)
• sleap_nn/data/pipelines.py (8 hunks)
• sleap_nn/data/providers.py (2 hunks)
• sleap_nn/data/resizing.py (4 hunks)
• sleap_nn/evaluation.py (1 hunks)
• sleap_nn/inference/paf_grouping.py (5 hunks)
• sleap_nn/inference/predictors.py (35 hunks)
• sleap_nn/inference/topdown.py (3 hunks)
• sleap_nn/tracking/init.py (1 hunks)
• sleap_nn/tracking/candidates/fixed_window.py (1 hunks)
• sleap_nn/tracking/candidates/local_queues.py (1 hunks)
• sleap_nn/tracking/track_instance.py (1 hunks)
• sleap_nn/tracking/tracker.py (1 hunks)
• sleap_nn/tracking/utils.py (1 hunks)
• sleap_nn/training/model_trainer.py (19 hunks)
• tests/architectures/test_model.py (15 hunks)
• tests/assets/minimal_instance/initial_config.yaml (2 hunks)
• tests/assets/minimal_instance/training_config.yaml (1 hunks)
• tests/assets/minimal_instance_bottomup/initial_config.yaml (2 hunks)
• tests/assets/minimal_instance_bottomup/training_config.yaml (3 hunks)
• tests/assets/minimal_instance_centroid/initial_config.yaml (2 hunks)
• tests/assets/minimal_instance_centroid/training_config.yaml (3 hunks)
• tests/data/test_augmentation.py (4 hunks)
• tests/data/test_confmaps.py (2 hunks)
• tests/data/test_edge_maps.py (2 hunks)
• tests/data/test_instance_centroids.py (3 hunks)
• tests/data/test_instance_cropping.py (2 hunks)
• tests/data/test_normalization.py (2 hunks)
• tests/data/test_pipelines.py (19 hunks)
• tests/data/test_providers.py (2 hunks)
• tests/data/test_resizing.py (2 hunks)
• tests/fixtures/datasets.py (2 hunks)
• tests/inference/test_bottomup.py (3 hunks)
• tests/inference/test_paf_grouping.py (1 hunks)
• tests/inference/test_predictors.py (10 hunks)
• tests/inference/test_single_instance.py (3 hunks)
• tests/inference/test_topdown.py (4 hunks)
• tests/tracking/candidates/test_fixed_window.py (1 hunks)
• tests/tracking/candidates/test_local_queues.py (1 hunks)
• tests/tracking/test_tracker.py (1 hunks)
• tests/training/test_model_trainer.py (19 hunks)

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