Merge initial mouse work. #115
Workflow file for this run
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| # Continuous integration | |
| name: CI | |
| on: | |
| pull_request: | |
| types: [opened, reopened, synchronize] | |
| paths: | |
| - "stac_mjx/**" | |
| - "tests/**" | |
| - ".github/workflows/ci.yml" | |
| - "environment.yml" | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - "stac_mjx/**" | |
| - "tests/**" | |
| - ".github/workflows/ci.yml" | |
| - "environment.yml" | |
| jobs: | |
| # Lint with black and docstring check with pydocstyle | |
| lint: | |
| # This job runs: | |
| # | |
| # 1. Linting with black | |
| # | |
| # 2. Docstring style checking with pydocstyle | |
| # Note: This uses Google-style docstring convention | |
| # Ref: https://google.github.io/styleguide/pyguide.html | |
| name: Lint | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: | | |
| pip install --editable .[dev] | |
| - name: Run Black | |
| run: | | |
| black --check stac_mjx tests | |
| - name: Run pydocstyle | |
| run: | | |
| pydocstyle --convention=google stac_mjx/ | |
| # Tests with pytest | |
| tests: | |
| timeout-minutes: 15 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python: ["3.11"] | |
| exclude: | |
| - os: "macos-14" | |
| python: "3.8" | |
| name: Tests (${{ matrix.os }}, Python ${{ matrix.python }}) | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-version: latest | |
| conda-solver: "libmamba" | |
| environment-file: environment.yml | |
| activate-environment: stac-mjx-env | |
| python-version: ${{ matrix.python }} | |
| - name: Print environment info | |
| shell: bash -l {0} | |
| run: | | |
| which python | |
| conda info | |
| conda list | |
| pip freeze | |
| - name: Test with pytest (with coverage) | |
| shell: bash -l {0} | |
| # Run pytest but ignore warnings from ndx_pose. If you need to add | |
| # more warnings, please consider adding to pyproject.toml | |
| run: | | |
| pytest --cov=stac_mjx --cov-report=xml --durations=-1 -W ignore::PendingDeprecationWarning tests/ | |
| - name: Upload coverage | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: true | |
| verbose: false | |
| token: ${{ secrets.CODECOV_TOKEN }} |