CI workflow #22
CI workflow #22
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WalkthroughThis update introduces a comprehensive Continuous Integration (CI) setup for the project, enhancing code quality through linting and testing. Key enhancements include the addition of configuration files for coverage reporting and a new module for versioning. Documentation improvements across various modules clarify function purposes, while a simple test ensures CI functionality. Overall, these changes streamline development and maintainability, establishing a solid foundation for future enhancements. Changes
Sequence Diagram(s)sequenceDiagram
participant CI as Continuous Integration
participant L as Linting Job
participant T as Testing Job
participant C as Codecov
CI->>L: Trigger on PR or push
L->>L: Lint code
L->>CI: Lint results
CI->>T: Trigger testing
T->>T: Run tests and collect coverage
T->>C: Upload coverage results
C->>CI: Coverage report
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Actionable comments posted: 1
Outside diff range, codebase verification and nitpick comments (1)
pyproject.toml (1)
5-16: Define project metadata.The
[project]section provides essential metadata, including the project name, authors, description, Python version requirement, keywords, license, and classifiers. Ensure the description and keywords are updated to reflect the project's purpose accurately.- description="TBD" - keywords = ["TBD"] + description="A brief description of the project" + keywords = ["keyword1", "keyword2"]
Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
Files selected for processing (15)
- .github/workflows/ci.yml (1 hunks)
- README.md (1 hunks)
- codecov.yml (1 hunks)
- environment.yml (1 hunks)
- pyproject.toml (1 hunks)
- stac_mjx/init.py (1 hunks)
- stac_mjx/compute_stac.py (3 hunks)
- stac_mjx/controller.py (9 hunks)
- stac_mjx/main.py (4 hunks)
- stac_mjx/operations.py (8 hunks)
- stac_mjx/stac_base.py (6 hunks)
- stac_mjx/utils.py (5 hunks)
- stac_mjx/version.py (1 hunks)
- stac_mjx/viz.py (4 hunks)
- tests/io/test_dummy.py (1 hunks)
Files skipped from review due to trivial changes (8)
- README.md
- stac_mjx/init.py
- stac_mjx/compute_stac.py
- stac_mjx/controller.py
- stac_mjx/main.py
- stac_mjx/operations.py
- stac_mjx/version.py
- tests/io/test_dummy.py
Additional context used
yamllint
codecov.yml
[error] 12-12: no new line character at the end of file
(new-line-at-end-of-file)
Additional comments not posted (29)
environment.yml (3)
12-12: Addblackdependency for code formatting.The addition of
blackensures consistent code formatting across the codebase, which is a good practice for maintaining code quality.
16-16: Addpytestdependency for testing.The addition of
pytestfacilitates the implementation of unit tests, which is essential for ensuring code correctness.
17-17: Addpytest-covdependency for code coverage.The addition of
pytest-covenables code coverage reporting, which helps in identifying untested parts of the codebase.codecov.yml (1)
1-12: Configure code coverage reporting.The
codecov.ymlfile is well-structured and sets up code coverage reporting for the project. It defines coverage targets for both the overall project and individual patches, which helps in maintaining code quality.Tools
yamllint
[error] 12-12: no new line character at the end of file
(new-line-at-end-of-file)
pyproject.toml (10)
1-3: Set up build system requirements.The
[build-system]section correctly specifiessetuptoolsas the requirement andsetuptools.build_metaas the build backend.
17-23: Specify project dependencies.The dependencies listed are appropriate for the project. Ensure that any additional dependencies are added as needed.
24-28: Configure dynamic attributes for version and readme.The
[tool.setuptools.dynamic]section correctly sets up dynamic attributes for the version and readme file.
30-39: Define optional development dependencies.The
[project.optional-dependencies]section lists development dependencies, which are essential for testing, documentation, and packaging. Ensure that only necessary dependencies are included.
41-43: Add project URLs.The
[project.urls]section provides links to the project's homepage and repository, which is useful for users and contributors.
45-46: Exclude specific directories from the package.The
[tool.setuptools.packages.find]section excludes thesitedirectory, which is appropriate for this project.
48-50: Configure Black code formatter.The
[tool.black]section sets the line length to 88, which is a common practice for maintaining readable code.
51-53: Configure Pydocstyle for docstring conventions.The
[pydocstyle]section sets the convention to "google" and matches the directorystac_mjx, which is appropriate for enforcing documentation standards.
55-56: Set up coverage tool configuration.The
[tool.coverage.run]section specifies the source directory for coverage measurement.
58-59: Configure pytest options for coverage reporting.The
[tool.pytest.ini_options]section adds options for coverage reporting, which is essential for maintaining code quality.stac_mjx/utils.py (5)
13-15: Docstring update approved.The updated docstring for
loadmatimproves clarity and conciseness.
25-27: Docstring update approved.The updated docstring for
_check_keysimproves clarity and conciseness.
36-36: Docstring update approved.The updated docstring for
_todictimproves clarity and conciseness.
61-61: New docstring approved.The new docstring for
init_paramsprovides useful context for the function's usage.
71-71: Docstring update approved.The updated docstring for
saveimproves clarity and conciseness..github/workflows/ci.yml (3)
1-19: Configuration approved.The
nameandonsections are correctly configured to trigger the workflow on pull requests and pushes to the main branch.
21-54: Configuration approved.The
lintjob is correctly configured to run linting with Black and docstring style checking with pydocstyle.
55-100: Configuration approved.The
testsjob is correctly configured to run tests with pytest and upload coverage reports using Codecov.stac_mjx/stac_base.py (4)
19-19: Docstring update approved.The updated docstring for
huberimproves clarity and conciseness.
26-26: Docstring update approved.The updated docstring for
squared_errorimproves clarity and conciseness.
Line range hint
121-138:
Docstring and parameter updates approved.The updated docstring for
m_lossimproves clarity and conciseness. The parameter name change fromoffsettooffsetsimproves clarity. The new parametersmjx_modelandmjx_dataexpand the function's functionality.
199-199: Docstring update approved.The updated docstring for
m_optimproves clarity and conciseness.stac_mjx/viz.py (3)
197-202: Docstring added foroverlay_vizfunction.The added docstring provides a clear and concise explanation of the function's purpose and functionality.
313-313: Docstring added formujoco_vizfunction.The added docstring succinctly states the function's purpose and is clear and to the point.
400-400: Docstring added formujoco_pair_vizfunction.The added docstring provides a clear and concise explanation of the function's purpose and functionality.
Implemented CI via GitHub Actions:
ci.yml+ other package related files (pyproject.toml,__init__.py,version.py,codecov.yml)NOTE: Many docstrings added were minimally descriptive. Issue 24 was created to address this.
Summary by CodeRabbit
New Features
Documentation
Chores