Jaladh's suggested changes

docs/io/configuration/components/plasma.rst

@@ -30,7 +30,7 @@ TARDIS currently supports three different kinds of line interaction: ``scatter``
 version of ``macroatom`` in which only downward transitions are allowed (see :ref:`lineinteraction`).
 
 Finally, ``w_epsilon`` describes the dilution factor to use to calculate :math:`J_\textrm{blue}` that are 0, which
-causes problemsl with the code (so :math:`J_\textrm{blue}` are set to a very small number).
+causes problems with the code (so :math:`J_\textrm{blue}` are set to a very small number).
 
 NLTE
 ^^^^

docs/io/optional/index.rst

@@ -4,7 +4,7 @@
 Optional Inputs
 ***************
 
-TARDIS also allows other inputs that are passed as arguments into the ``run_tardis`` function.
+TARDIS also allows other inputs that are passed as keyword arguments into the ``run_tardis`` function.
 
 .. toctree::
     :maxdepth: 1
@@ -13,6 +13,13 @@ TARDIS also allows other inputs that are passed as arguments into the ``run_tard
     callback_example
 
 
-Additionally, ``run_tardis`` can take in a filepath for the atomic data and a boolian for virtual packet logging, both of
-which are also options in the :ref:`configuration file <config-components>`. The options to pass them inside ``run_tardis``
+Additionally, ``run_tardis`` can take in a filepath for the atomic data and a boolian for virtual packet logging. For example:
+
+.. code-block:: python
+    
+    from tardis.base import run_tardis
+
+    sim = run_tardis('configuration_file', atom_data='filepath_to_atomic_data', virtual_packet_logging=True)
+
+Both of these are also options in the :ref:`configuration file <config-components>`. The option to pass them inside ``run_tardis``
 may be removed in a future release of the code.

docs/io/output/vpacket_logging.rst

@@ -19,6 +19,8 @@ After running the simulation, the following information can be retrieved:
 
     * - Attribute of Simulation
       - Description
+    * - ``virt_packet_logging``
+      - Boolean that shows if virtual packet logging is turned on
     * - ``runner.virt_packet_nus``
       - List of virtual packet frequencies
     * - ``runner.virt_packet_energies``