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General bugfixing #39

Merged
merged 120 commits into from
Jun 25, 2013
Merged

General bugfixing #39

merged 120 commits into from
Jun 25, 2013

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wkerzendorf
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Added the ability to track the last interaction of the packets. In addition, there's a new analysis package. and several other fixes

maryampatel and others added 30 commits March 17, 2013 01:04
@maryampatel
updated test cases in test_lte_plasma.py
a9ab925
@wkerzendorf
got rid of sigma_thomson in montecarlo_multizone
cf8df8c
@wkerzendorf
added logging for nlte
db96a0f
@wkerzendorf
added new setup.py from package templates
b36972d
@wkerzendorf
added logger warnings when overflowing macroatom
93cc1e7
@wkerzendorf
added default values for last_no_of_packets and virtual_packets (in c…
1b9794e 
…onfig_reader)
@wkerzendorf
fixes
5384ed7
@wkerzendorf
added w_epsilon to the config_file
40d7263
@wkerzendorf
fixed j_blues = 0 using w_epsilon
2e8e3e3
@wkerzendorf
logger for atom data uuid and md5
d99a639
@wkerzendorf
cleanup of various files - included new atom_data.h5 with new tardisa…
8dcc5a0 
…tomic
@wkerzendorf
CRITICAL error in the NLTE calculation - merge as soon as possible
d218589
@wkerzendorf
removed pdb.set_trace debugging statement
3e3bc32
@wkerzendorf
changed np.empty.. to np.zeros
2c17548
@mklauser
Merge pull request #29 from wkerzendorf/general_bugfixing
c14e959 
General bugfixing
looks good to me
@wkerzendorf
fixed problems with the collision data. It should work now.
f2c8418
@wkerzendorf
CRITICAL Error prevented NLTE level populations making it in the tau_…
809e7c8 
…sobolev calculations (they were overwritten beforehand).
@maryampatel
updated test cases
07860c3
@wkerzendorf
added electron density to history
0e63f4b
@wkerzendorf
debugging problems - with debug statements in there DO NOT USE
a861691
@wkerzendorf
minor changes to model_history
3ccf586
@wkerzendorf
first construction of the collision_matrix
5875556
@wkerzendorf
implemented new_matrix
c7abaf4
@wkerzendorf
bug fixing new rates matrix
c6d6162
@wkerzendorf
fixed up rates_matrix just changing nlte container class. speedup of …
66e5efb 
…3000
@wkerzendorf
changed to NLTE data
8f5491c
@wkerzendorf
restructure complete ready for merge
0ff4ca7
@wkerzendorf
Merge pull request #32 from maryampatel/plasma/testing2
adeb8dd 
Plasma/testing2
@wkerzendorf
added classical nebular and coronal approximations.
22b1a81
@wkerzendorf
changed the BasePlasma class initializer. Added a classmethod to read…
1d05bb6 
… from an abundance dictionary
wkerzendorf and others added 27 commits June 12, 2013 16:22
@wkerzendorf
added adam's gui to the running of tardis
8be5c31
@wkerzendorf
added spectrum plotting
7d434b7
@nathanielatom
added several docstrings
6188abb
@nathanielatom
"New layout, and dialog plot"
40fbc8b
@wkerzendorf @nathanielatom
added adam's gui to the running of tardis
aa4f552
@wkerzendorf @nathanielatom
added spectrum plotting
bfadc38
@nathanielatom
updated comment on how to start up ipython
f9323d2
@nathanielatom
updated comment on how to start up ipython
51e092a
@nathanielatom
"changed comment regarding how to initialize IPython"
ad9891f
@nathanielatom
"Added spectrum plot"
37b992d
@nathanielatom
"changed comment regarding how to initialize IPython"
7c9ff3a
@nathanielatom
"changed comment regarding how to initialize IPython"
717edd6
@nathanielatom
changed intialization description
ce75206
@nathanielatom
"added t_rads subplot, and ability to change between displaying spec_…
42b8435 
…flux_angstrom and spec_virtual_flux_angstrom"
@wkerzendorf
fixed some problems in the docs
1287b57
@nathanielatom
removed tracked files
4cb22b5
@nathanielatom
removed tracked files
e70463f
@nathanielatom
removed tracked files
fb0725b
@wkerzendorf
fixed W > 1 in excitation formula
0d6bf34
@wkerzendorf
fixed stupid numpy error
a73869f
@nathanielatom
Merge branch 'general_bugfixing' of github.com:wkerzendorf/tardis
493b6d9
@nathanielatom
added switchable shell viewer (t_rads or Ws)
5dc82b1
@nathanielatom
started on shell info dialogue
faed002
@nathanielatom
started on shell info dialog
6b8bb15
@nathanielatom
"deleted some files"
2981819
@nathanielatom
deleted orig file
ae1dbe6 
Please enter the commit message for your changes. Lines starting
@nathanielatom
Merge pull request #46 from nathanielatom/gui/dialogue
83ee861 
Gui/dialogue
wkerzendorf added a commit that referenced this pull request Jun 25, 2013
@wkerzendorf
Merge pull request #39 from wkerzendorf/general_bugfixing
c2cfd6c 
General bugfixing
@wkerzendorf wkerzendorf merged commit c2cfd6c into master Jun 25, 2013
@wkerzendorf wkerzendorf deleted the general_bugfixing branch June 25, 2013 19:30
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4 participants
@wkerzendorf @maryampatel @mklauser @nathanielatom