Generalized the SVT parsing code for external use, specifically in be… #121
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| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| name: Run tests | |
| jobs: | |
| build: | |
| name: Run tests | |
| runs-on: ubuntu-latest | |
| container: bioconductor/bioconductor_docker:RELEASE_3_19 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| parallel: [true, false] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Get latest CMake | |
| uses: lukka/get-cmake@latest | |
| - name: Configure the build | |
| run: cmake -S . -B build | |
| - name: Set directories | |
| run: | | |
| echo "R_PKG_DIR=${R_HOME}/site-library" >> $GITHUB_ENV | |
| - name: Restore the package directory | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_PKG_DIR }} | |
| key: preinstalled-packages | |
| - name: Install dependencies | |
| shell: Rscript {0} | |
| run: | | |
| BiocManager::install(c("DelayedArray", "Rcpp", "testthat")) | |
| - name: Turn off parallelization flags | |
| if: ${{ !matrix.parallel }} | |
| run: | | |
| cat tests/src/Makevars | grep -v "TEST_CUSTOM_PARALLEL" > .tmp | |
| cat .tmp | |
| mv .tmp tests/src/Makevars | |
| - name: Install the test package | |
| run: R CMD INSTALL tests | |
| - name: Run the tests | |
| shell: Rscript {0} | |
| run: | | |
| setwd("tests/tests") | |
| testthat::test_file("testthat.R", stop_on_failure=TRUE) |