Bumped version for a new release. #123
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| name: Run tests | |
| jobs: | |
| build: | |
| name: Run tests | |
| runs-on: ubuntu-latest | |
| container: bioconductor/bioconductor_docker:RELEASE_3_19 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| parallel: [true, false] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Get latest CMake | |
| uses: lukka/get-cmake@latest | |
| - name: Configure the build | |
| run: cmake -S . -B build | |
| - name: Set directories | |
| run: | | |
| echo "R_PKG_DIR=${R_HOME}/site-library" >> $GITHUB_ENV | |
| - name: Restore the package directory | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_PKG_DIR }} | |
| key: preinstalled-packages | |
| - name: Install dependencies | |
| shell: Rscript {0} | |
| run: | | |
| BiocManager::install(c("DelayedArray", "Rcpp", "testthat")) | |
| - name: Turn off parallelization flags | |
| if: ${{ !matrix.parallel }} | |
| run: | | |
| cat tests/src/Makevars | grep -v "TEST_CUSTOM_PARALLEL" > .tmp | |
| cat .tmp | |
| mv .tmp tests/src/Makevars | |
| - name: Install the test package | |
| run: R CMD INSTALL tests | |
| - name: Run the tests | |
| shell: Rscript {0} | |
| run: | | |
| setwd("tests/tests") | |
| testthat::test_file("testthat.R", stop_on_failure=TRUE) |