Fix some TODOs #919
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| --- | |
| name: External Use | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| - "dev" | |
| pull_request: | |
| branches: | |
| - "main" | |
| - "dev" | |
| workflow_dispatch: | |
| permissions: read-all | |
| jobs: | |
| tima-test: | |
| name: tima-${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| strategy: | |
| matrix: | |
| os: | |
| - "ubuntu-latest" | |
| - "macos-latest" | |
| - "windows-latest" | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| Ncpus: 2 | |
| - name: Install package | |
| run: | | |
| Rscript inst/scripts/install.R | |
| - name: Get example files | |
| run: | | |
| Rscript inst/scripts/get_example_spectra.R | |
| Rscript inst/scripts/get_example_features.R | |
| Rscript inst/scripts/get_example_metadata.R | |
| # Rscript inst/scripts/get_example_sirius.R | |
| - name: Run tests | |
| run: | | |
| Rscript inst/scripts/tima_full.R | |
| # Check if targets works correctly | |
| Rscript inst/scripts/tima_full.R |