Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

this is attempt at iregnet pred #2

Open
wants to merge 9 commits into
base: master
Choose a base branch
from
  •  
  •  
  •  
The diff you're trying to view is too large. We only load the first 3000 changed files.
Binary file added .RData
Binary file not shown.
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
train.size,percent.correct.labels,auc,N.test,percent.correct.intervals
,84.4871794871795,0.887774013551216,130,65.3846153846154
Original file line number Diff line number Diff line change
@@ -0,0 +1,131 @@
sequenceID,pred.log.lambda
ATAC_JV_adipose/samples/AC1/MSC77/problems/chr14:19050000-107289540,9.91612322255677
ATAC_JV_adipose/samples/AC1/MSC80/problems/chr14:19050000-107289540,9.73411261683421
ATAC_JV_adipose/samples/AC1/MSC83/problems/chr14:19050000-107289540,10.062179858675
ATAC_JV_adipose/samples/AC1/MSC91/problems/chr14:19050000-107289540,9.94778299319399
ATAC_JV_adipose/samples/AC2/MSC70/problems/chr10:51448845-125869472,9.63566283121333
ATAC_JV_adipose/samples/AC2/MSC70/problems/chr12:66500000-109373470,8.90165070260547
ATAC_JV_adipose/samples/AC2/MSC70/problems/chr14:19050000-107289540,9.85582689972303
ATAC_JV_adipose/samples/AC2/MSC70/problems/chr2:162200000-234003741,9.48717311079529
ATAC_JV_adipose/samples/AC2/MSC70/problems/chr8:48135599-86500000,8.48814024072023
ATAC_JV_adipose/samples/AC2/MSC70/problems/chr8:87000000-142766515,9.01212244831019
ATAC_JV_adipose/samples/AC2/MSC72/problems/chr10:51448845-125869472,9.53033475646333
ATAC_JV_adipose/samples/AC2/MSC72/problems/chr12:66500000-109373470,8.84412566093227
ATAC_JV_adipose/samples/AC2/MSC72/problems/chr14:19050000-107289540,9.63272371749402
ATAC_JV_adipose/samples/AC2/MSC72/problems/chr2:162200000-234003741,9.41919495092289
ATAC_JV_adipose/samples/AC2/MSC72/problems/chr8:48135599-86500000,8.44682571949448
ATAC_JV_adipose/samples/AC2/MSC72/problems/chr8:87000000-142766515,8.79840364073013
ATAC_JV_adipose/samples/AC2/MSC73/problems/chr10:51448845-125869472,9.4752924777055
ATAC_JV_adipose/samples/AC2/MSC73/problems/chr12:66500000-109373470,9.34069965200692
ATAC_JV_adipose/samples/AC2/MSC73/problems/chr14:19050000-107289540,9.42620074412881
ATAC_JV_adipose/samples/AC2/MSC73/problems/chr2:162200000-234003741,9.11438972191923
ATAC_JV_adipose/samples/AC2/MSC73/problems/chr8:48135599-86500000,8.92674473920619
ATAC_JV_adipose/samples/AC2/MSC73/problems/chr8:87000000-142766515,8.64332643705891
ATAC_JV_adipose/samples/AC2/MSC74/problems/chr10:51448845-125869472,10.1298572595216
ATAC_JV_adipose/samples/AC2/MSC74/problems/chr12:66500000-109373470,9.51743157414759
ATAC_JV_adipose/samples/AC2/MSC74/problems/chr14:19050000-107289540,10.6194171595068
ATAC_JV_adipose/samples/AC2/MSC74/problems/chr2:162200000-234003741,10.0032152173777
ATAC_JV_adipose/samples/AC2/MSC74/problems/chr8:48135599-86500000,9.45389172554633
ATAC_JV_adipose/samples/AC2/MSC74/problems/chr8:87000000-142766515,9.33849673998258
ATAC_JV_adipose/samples/AC2/MSC77/problems/chr10:51448845-125869472,9.28660889512471
ATAC_JV_adipose/samples/AC2/MSC77/problems/chr12:66500000-109373470,8.70651753652698
ATAC_JV_adipose/samples/AC2/MSC77/problems/chr14:19050000-107289540,9.45296472670434
ATAC_JV_adipose/samples/AC2/MSC77/problems/chr2:162200000-234003741,9.23320651533782
ATAC_JV_adipose/samples/AC2/MSC77/problems/chr8:48135599-86500000,8.46151074014471
ATAC_JV_adipose/samples/AC2/MSC77/problems/chr8:87000000-142766515,8.59444968296588
ATAC_JV_adipose/samples/AC2/MSC80/problems/chr10:51448845-125869472,9.37990223669715
ATAC_JV_adipose/samples/AC2/MSC80/problems/chr12:66500000-109373470,9.11068225920487
ATAC_JV_adipose/samples/AC2/MSC80/problems/chr14:19050000-107289540,10.1360215554204
ATAC_JV_adipose/samples/AC2/MSC80/problems/chr2:162200000-234003741,9.61936871049456
ATAC_JV_adipose/samples/AC2/MSC80/problems/chr8:48135599-86500000,8.36833818230697
ATAC_JV_adipose/samples/AC2/MSC80/problems/chr8:87000000-142766515,9.0158774243391
ATAC_JV_adipose/samples/AC2/MSC83/problems/chr10:51448845-125869472,9.64080921498747
ATAC_JV_adipose/samples/AC2/MSC83/problems/chr12:66500000-109373470,8.84592618278087
ATAC_JV_adipose/samples/AC2/MSC83/problems/chr14:19050000-107289540,9.63320830518466
ATAC_JV_adipose/samples/AC2/MSC83/problems/chr2:162200000-234003741,9.34862847768584
ATAC_JV_adipose/samples/AC2/MSC83/problems/chr8:48135599-86500000,8.1260851378274
ATAC_JV_adipose/samples/AC2/MSC83/problems/chr8:87000000-142766515,8.68680001115206
ATAC_JV_adipose/samples/AC2/MSC91/problems/chr10:51448845-125869472,9.50055509829126
ATAC_JV_adipose/samples/AC2/MSC91/problems/chr12:66500000-109373470,8.97421874099287
ATAC_JV_adipose/samples/AC2/MSC91/problems/chr14:19050000-107289540,9.50219469048579
ATAC_JV_adipose/samples/AC2/MSC91/problems/chr2:162200000-234003741,9.19670770895336
ATAC_JV_adipose/samples/AC2/MSC91/problems/chr8:48135599-86500000,7.80542267366722
ATAC_JV_adipose/samples/AC2/MSC91/problems/chr8:87000000-142766515,8.5845507107972
ATAC_JV_adipose/samples/ACi/MSC77/problems/chr14:19050000-107289540,10.3193037962575
ATAC_JV_adipose/samples/ACi/MSC80/problems/chr14:19050000-107289540,10.1326468087484
ATAC_JV_adipose/samples/ACi/MSC83/problems/chr14:19050000-107289540,10.1760280858932
ATAC_JV_adipose/samples/ACi/MSC91/problems/chr14:19050000-107289540,9.9182233819918
ATAC_JV_adipose/samples/AD1/MSC77/problems/chr14:19050000-107289540,9.40078671347943
ATAC_JV_adipose/samples/AD1/MSC80/problems/chr14:19050000-107289540,9.72458482854504
ATAC_JV_adipose/samples/AD1/MSC83/problems/chr14:19050000-107289540,9.90431739448992
ATAC_JV_adipose/samples/AD1/MSC91/problems/chr14:19050000-107289540,9.80544573183457
ATAC_JV_adipose/samples/AD2/MSC70/problems/chr10:51448845-125869472,9.44678896051995
ATAC_JV_adipose/samples/AD2/MSC70/problems/chr12:66500000-109373470,8.29609065029225
ATAC_JV_adipose/samples/AD2/MSC70/problems/chr14:19050000-107289540,9.44648833512171
ATAC_JV_adipose/samples/AD2/MSC70/problems/chr2:162200000-234003741,9.18027399233693
ATAC_JV_adipose/samples/AD2/MSC70/problems/chr8:48135599-86500000,7.70528480489285
ATAC_JV_adipose/samples/AD2/MSC70/problems/chr8:87000000-142766515,8.51497286911074
ATAC_JV_adipose/samples/AD2/MSC72/problems/chr10:51448845-125869472,9.39276032839045
ATAC_JV_adipose/samples/AD2/MSC72/problems/chr12:66500000-109373470,7.99398013326348
ATAC_JV_adipose/samples/AD2/MSC72/problems/chr14:19050000-107289540,9.6791424554922
ATAC_JV_adipose/samples/AD2/MSC72/problems/chr2:162200000-234003741,9.08626509988809
ATAC_JV_adipose/samples/AD2/MSC72/problems/chr8:48135599-86500000,8.14025140322794
ATAC_JV_adipose/samples/AD2/MSC72/problems/chr8:87000000-142766515,8.40098801163262
ATAC_JV_adipose/samples/AD2/MSC73/problems/chr10:51448845-125869472,10.1575788892666
ATAC_JV_adipose/samples/AD2/MSC73/problems/chr12:66500000-109373470,8.777300257687
ATAC_JV_adipose/samples/AD2/MSC73/problems/chr14:19050000-107289540,9.94524547889463
ATAC_JV_adipose/samples/AD2/MSC73/problems/chr2:162200000-234003741,9.44849117783267
ATAC_JV_adipose/samples/AD2/MSC73/problems/chr8:48135599-86500000,7.97053229507626
ATAC_JV_adipose/samples/AD2/MSC73/problems/chr8:87000000-142766515,8.93645090885791
ATAC_JV_adipose/samples/AD2/MSC74/problems/chr10:51448845-125869472,9.50501683189993
ATAC_JV_adipose/samples/AD2/MSC74/problems/chr12:66500000-109373470,8.63522347579118
ATAC_JV_adipose/samples/AD2/MSC74/problems/chr14:19050000-107289540,9.83048458748623
ATAC_JV_adipose/samples/AD2/MSC74/problems/chr2:162200000-234003741,9.45884143420191
ATAC_JV_adipose/samples/AD2/MSC74/problems/chr8:48135599-86500000,7.86075631190181
ATAC_JV_adipose/samples/AD2/MSC74/problems/chr8:87000000-142766515,8.63649467711357
ATAC_JV_adipose/samples/AD2/MSC80/problems/chr10:51448845-125869472,9.87914617902702
ATAC_JV_adipose/samples/AD2/MSC80/problems/chr12:66500000-109373470,8.65342206698549
ATAC_JV_adipose/samples/AD2/MSC80/problems/chr14:19050000-107289540,10.217613381369
ATAC_JV_adipose/samples/AD2/MSC80/problems/chr2:162200000-234003741,9.22759880845144
ATAC_JV_adipose/samples/AD2/MSC80/problems/chr8:48135599-86500000,7.83433422102367
ATAC_JV_adipose/samples/AD2/MSC80/problems/chr8:87000000-142766515,9.04988739590954
ATAC_JV_adipose/samples/AD2/MSC83/problems/chr10:51448845-125869472,9.60141348975723
ATAC_JV_adipose/samples/AD2/MSC83/problems/chr12:66500000-109373470,8.95746777727369
ATAC_JV_adipose/samples/AD2/MSC83/problems/chr14:19050000-107289540,9.98093824206268
ATAC_JV_adipose/samples/AD2/MSC83/problems/chr2:162200000-234003741,9.27107683017362
ATAC_JV_adipose/samples/AD2/MSC83/problems/chr8:48135599-86500000,7.96606464494836
ATAC_JV_adipose/samples/AD2/MSC83/problems/chr8:87000000-142766515,8.99736947466312
ATAC_JV_adipose/samples/AD2/MSC91/problems/chr10:51448845-125869472,9.60912359875603
ATAC_JV_adipose/samples/AD2/MSC91/problems/chr12:66500000-109373470,8.43838001149138
ATAC_JV_adipose/samples/AD2/MSC91/problems/chr14:19050000-107289540,9.71992584577736
ATAC_JV_adipose/samples/AD2/MSC91/problems/chr2:162200000-234003741,9.07204189647843
ATAC_JV_adipose/samples/AD2/MSC91/problems/chr8:48135599-86500000,7.44051247659586
ATAC_JV_adipose/samples/AD2/MSC91/problems/chr8:87000000-142766515,8.86058518561898
ATAC_JV_adipose/samples/Ai/MSC77/problems/chr14:19050000-107289540,9.91340632417374
ATAC_JV_adipose/samples/Ai/MSC80/problems/chr14:19050000-107289540,10.2563146006893
ATAC_JV_adipose/samples/Ai/MSC83/problems/chr14:19050000-107289540,9.71170875874174
ATAC_JV_adipose/samples/Ai/MSC91/problems/chr14:19050000-107289540,9.7547874210298
ATAC_JV_adipose/samples/ND2/MSC77/problems/chr10:51448845-125869472,9.33124907431937
ATAC_JV_adipose/samples/ND2/MSC77/problems/chr12:66500000-109373470,8.80545582385567
ATAC_JV_adipose/samples/ND2/MSC77/problems/chr14:19050000-107289540,9.88693336632513
ATAC_JV_adipose/samples/ND2/MSC77/problems/chr2:162200000-234003741,10.088600439371
ATAC_JV_adipose/samples/ND2/MSC77/problems/chr8:48135599-86500000,8.16793505179981
ATAC_JV_adipose/samples/ND2/MSC77/problems/chr8:87000000-142766515,8.5365224697513
ATAC_JV_adipose/samples/ND2/MSC80/problems/chr10:51448845-125869472,9.69718770495399
ATAC_JV_adipose/samples/ND2/MSC80/problems/chr12:66500000-109373470,8.21168511139216
ATAC_JV_adipose/samples/ND2/MSC80/problems/chr14:19050000-107289540,10.5392837724213
ATAC_JV_adipose/samples/ND2/MSC80/problems/chr2:162200000-234003741,9.31119915017857
ATAC_JV_adipose/samples/ND2/MSC80/problems/chr8:48135599-86500000,8.07940305399875
ATAC_JV_adipose/samples/ND2/MSC80/problems/chr8:87000000-142766515,9.01070977116388
ATAC_JV_adipose/samples/ND2/MSC83/problems/chr10:51448845-125869472,9.59785276112246
ATAC_JV_adipose/samples/ND2/MSC83/problems/chr12:66500000-109373470,8.85372116821183
ATAC_JV_adipose/samples/ND2/MSC83/problems/chr14:19050000-107289540,10.3105978553007
ATAC_JV_adipose/samples/ND2/MSC83/problems/chr2:162200000-234003741,10.2706821984868
ATAC_JV_adipose/samples/ND2/MSC83/problems/chr8:48135599-86500000,7.81838169092794
ATAC_JV_adipose/samples/ND2/MSC83/problems/chr8:87000000-142766515,8.99987348326296
ATAC_JV_adipose/samples/ND2/MSC91/problems/chr10:51448845-125869472,9.41806914365466
ATAC_JV_adipose/samples/ND2/MSC91/problems/chr12:66500000-109373470,8.04186645773456
ATAC_JV_adipose/samples/ND2/MSC91/problems/chr14:19050000-107289540,9.7978380922407
ATAC_JV_adipose/samples/ND2/MSC91/problems/chr2:162200000-234003741,9.04183247985672
ATAC_JV_adipose/samples/ND2/MSC91/problems/chr8:48135599-86500000,7.77209068824757
ATAC_JV_adipose/samples/ND2/MSC91/problems/chr8:87000000-142766515,8.61725430693214
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
train.size,percent.correct.labels,auc,N.test,percent.correct.intervals
,84.6153846153846,0.887923475488242,130,66.1538461538462
Loading