This repository contains scripts and Jupyter notebooks associated with Durham, et al. "Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes." Genome Research. 2021. doi: 10.1101/gr.271791.120
It contains four directories:
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analysis_steps/ Contains readme files listing the commands to run to reproduce the analyses in the paper.
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notebooks/ Contains Jupyter notebooks to reproduce figures from the paper
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refdata/ Contains reference files that help to reproduce the analyses/figures
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scripts/ Contains the scripts referenced in the readme files from the analysis_steps directory