⬆️ Bump scipy from 1.13.1 to 1.14.0 (#618)

* ⬆️ Bump scipy from 1.13.1 to 1.14.0

Bumps [scipy](https://github.com/scipy/scipy) from 1.13.1 to 1.14.0.
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.13.1...v1.14.0)

---
updated-dependencies:
- dependency-name: scipy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

* require python 3.9

* try to fix conda

* try to fix conda

* require new pip

* wip

* wip

* wip

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Dion Häfner <dion.haefner@simulation.science>

.github/workflows/test-all.yml

@@ -18,7 +18,7 @@ jobs:
 
  matrix:
  os: [ubuntu-20.04]
- python-version: ["3.8", "3.12"]
+ python-version: ["3.9", "3.12"]
  backend: [numpy, jax]
 
  env:
@@ -103,13 +103,8 @@ jobs:
  mkdir -p $PYOM2_DIR
  cp -r vendor/pyom2/* $PYOM2_DIR
  pushd $PYOM2_DIR
- if [ ${{ matrix.python-version }} == "3.8" ]
- then
- mv pyOM2_site_specific_distutils site_specific.mk_
- else
- pip install meson ninja
- mv pyOM2_site_specific_meson site_specific.mk_
- fi
+ pip install meson ninja
+ mv pyOM2_site_specific_meson site_specific.mk_
  tar xzf pyOM2.1.0.tar.gz
  git init
  for patchfile in ./patches/*.patch; do

.github/workflows/test-conda.yml

@@ -43,7 +43,7 @@ jobs:
  with:
  activate-environment: veros
  environment-file: conda-environment.yml
- use-only-tar-bz2: true
+ auto-update-conda: true
 
  - name: Install test dependencies
  run: |

.github/workflows/test-install.yml

@@ -20,13 +20,13 @@ jobs:
 
  matrix:
  os: [ubuntu-latest, macos-latest, windows-latest]
- python-version: ["3.8", "3.12"]
+ python-version: ["3.9", "3.12"]
  nocc: [false]
 
  include:
  # also test whether installation without C compiler works
  - os: ubuntu-latest
- python-version: "3.8"
+ python-version: "3.9"
  nocc: true
 
  runs-on: ${{ matrix.os }}

conda-environment.yml

@@ -2,10 +2,11 @@ name: veros
 
 channels:
  - conda-forge
+ - nodefaults
 
 dependencies:
- - python=3.8
- - pip
+ - python=3.12
+ - pip>=24.0
  - click
  - entrypoints
  - requests

requirements.txt

@@ -2,7 +2,7 @@ click==8.1.7
 entrypoints==0.4
 requests==2.32.3
 numpy==1.26.4
-scipy==1.13.1
+scipy==1.14.0
 h5netcdf==1.3.0
 h5py==3.11.0
 pillow==10.3.0

setup.py

@@ -22,7 +22,6 @@
 Intended Audience :: Science/Research
 License :: OSI Approved :: MIT License
 Programming Language :: Python :: 3
-Programming Language :: Python :: 3.8
 Programming Language :: Python :: 3.9
 Programming Language :: Python :: 3.10
 Programming Language :: Python :: 3.11
@@ -159,7 +158,7 @@ def _env_to_bool(envvar):
  long_description=long_description,
  long_description_content_type="text/markdown",
  url="https://veros.readthedocs.io",
- python_requires=">=3.8",
+ python_requires=">=3.9",
  version=versioneer.get_version(),
  cmdclass=cmdclass,
  packages=find_packages(),

veros/core/external/solvers/scipy.py

@@ -53,7 +53,7 @@ def _scipy_solver(self, state, rhs, x0, boundary_val):
  rhs,
  x0=x0,
  atol=1e-8,
- tol=0,
+ rtol=0,
  maxiter=1000,
  **self._extra_args,
  )