coesra-singularity-openrefine

The main idea of this repository is to build the Openrefine application in a docker container and then convert it into Singularity. The following commands and rools are require to be able to build the docker image and then build the singularity image.

Require Tools

• docker
• Docker2Singularity

Build docker image

docker build . -t openrefine:3.4.1

Run in local with docker

docker run --rm --name openrefine -it openrefine:3.4.1

• Now open your browserin localhost

Docker2Singularity

The following command will generate a file.simg, and it is what you need to run with singularity.

docker run \
    -v /var/run/docker.sock:/var/run/docker.sock \
    -v $HOME/<OUTPUT_PATH>:/output \
    --privileged -t --rm \
    singularityware/docker2singularity \
    --name <OUTPUT_NAME> openrefine:3.4.1