BEAGLE is a fantastic imputation tool for SNPs and multiallelic markers. Unfortunately, the current version of BEAGLE does not report phased genotype posteriors. To address this issue, this repository alters some of the internals of the original program so that it can also return phased genotype posteriors that can be used as input to other analyses
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Version of BEAGLE capable of outputting phased genotype probabilities
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tfwillems/PhasedBEAGLE
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Version of BEAGLE capable of outputting phased genotype probabilities
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