Use standard pyproject.toml

.github/workflows/test.yml

@@ -21,7 +21,7 @@ jobs:
     strategy:
       matrix:
         python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
-        numpy: ["--pre numpy"]
+        # numpy: ["--pre numpy"]
         include:
           - python-version: "3.9"
             numpy: numpy==1.22.0
@@ -41,25 +41,15 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
           allow-prereleases: true
-      - uses: actions/cache@v4
-        with:
-          path: ~/.cache/pip
-          key: ${{ runner.os }}-pip-${{ hashFiles('pyproject.toml') }}
-          restore-keys: |
-            ${{ runner.os }}-pip-
       - uses: actions/cache@v4
         with:
           path: ~/.cache/pre-commit
           key: ${{ runner.os }}-pre-commit-${{ hashFiles('.pre-commit-config.yaml') }}
-      - name: Setup Poetry
-        run: |
-          pip install -U pip
-          pip install poetry==1.7.0
-          poetry install --only dev
-          poetry run pip install ${{matrix.numpy}}
+      - name: Install uv
+        uses: astral-sh/setup-uv@v3
       - name: Pre-commit
         run: |
-          poetry run pre-commit run --all-files
+          uv run --extra dev --with ${{matrix.numpy}} pre-commit run --all-files
       - name: Pytest
         run: |
-          poetry run pytest -Werror --cov --cov-report term-missing --cov-fail-under=100
+          uv run --extra dev --with ${{matrix.numpy}} pytest -Werror --cov --cov-report term-missing --cov-fail-under=100

.pre-commit-config.yaml

@@ -31,8 +31,3 @@ repos:
         language: python
         types_or: [python, pyi]
         require_serial: true
-
-  - repo: https://github.com/python-poetry/poetry
-    rev: '1.7.0'
-    hooks:
-    - id: poetry-check

.readthedocs.yml

@@ -7,11 +7,11 @@ build:
   os: ubuntu-22.04
   tools:
     python: "3.9"
-  jobs:
-    pre_build:
-      - pip install poetry==1.7.0
-      - poetry config virtualenvs.create false
-      - poetry install
+  # jobs:
+  #   pre_build:
+  #     - pip install uv
+  #     - uv sync
+  #     - source $READTHEDOCS_VIRTUALENV_PATH/activate
 
 sphinx:
   configuration: docs/source/conf.py

pyproject.toml

@@ -1,36 +1,51 @@
-[tool.poetry]
+[build-system]
+requires = ["hatchling", "hatch-vcs"]
+build-backend = "hatchling.build"
+
+[project]
 name = "edfio"
-version = "0.0.0"
 description = "Read and write EDF/EDF+ files."
-license = "Apache-2.0"
-authors = ["The Siesta Group <opensource@thesiestagroup.com>"]
+license = { text = "Apache-2.0" }
+authors = [
+    { name = "The Siesta Group", email = "opensource@thesiestagroup.com" }
+]
 readme = "README.md"
-repository = "https://github.com/the-siesta-group/edfio"
-documentation = "https://edfio.readthedocs.io"
+requires-python = ">=3.9"
+dependencies = [
+    "numpy >= 1.22.0"
+]
+dynamic = ["version"]
 
-[tool.poetry.dependencies]
-python = "^3.9"
-numpy = ">=1.22.0"
+[project.optional-dependencies]
+dev = [
+    "pytest>=7.4.3",
+    "pytest-cov>=4.1.0",
+    "pre-commit>=3.5.0",
+    "mypy>=1.6.1",
+    "ruff>=0.3.4",
+    "sphinx>=7.2.6",
+    "myst-parser>=2.0.0",
+    "pydata-sphinx-theme>=0.14.3",
+    "numpydoc>=1.6.0"
+]
 
-[tool.poetry.group.dev.dependencies]
-pytest = "7.4.3"
-pytest-cov = "4.1.0"
-pre-commit = "3.5.0"
-mypy = "1.6.1"
-ruff = "0.3.4"
-sphinx = "7.2.6"
-myst-parser = "2.0.0"
-pydata-sphinx-theme = "0.14.3"
-numpydoc = "1.6.0"
+[project.urls]
+repository = "https://github.com/the-siesta-group/edfio"
+documentation = "https://edfio.readthedocs.io"
 
-[tool.poetry-dynamic-versioning]
-vcs = "git"
-style = "semver"
-enable = true
+[tool.hatch.version]
+source = "vcs"
+raw-options = { version_scheme = "release-branch-semver" }
 
-[build-system]
-requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.0.0,<2.0.0"]
-build-backend = "poetry_dynamic_versioning.backend"
+[tool.mypy]
+python_version = "3.9"
+ignore_missing_imports = true
+disallow_untyped_defs = true
+warn_unreachable = true
+strict_equality = true
+pretty = true
+warn_unused_ignores = true
+packages = ["edfio"]
 
 [tool.ruff]
 target-version = "py39"
@@ -70,13 +85,3 @@ ban-relative-imports = "all"
 
 [tool.ruff.lint.pydocstyle]
 convention = "numpy"
-
-[tool.mypy]
-python_version = "3.9"
-ignore_missing_imports = true
-disallow_untyped_defs = true
-warn_unreachable = true
-strict_equality = true
-pretty = true
-warn_unused_ignores = true
-packages = ["edfio"]

tests/conftest.py

@@ -3,6 +3,6 @@
 import pytest
 
 
-@pytest.fixture()
+@pytest.fixture
 def tmp_file(tmp_path: Path) -> Path:
     return tmp_path / "target.edf"

tests/test_edf_header.py

@@ -29,19 +29,19 @@ def test_decode_edfplus_date_invalid_month_name():
         _decode_edfplus_date("02-MAI-1951")
 
 
-@pytest.fixture()
+@pytest.fixture
 def patient():
     return Patient._from_str("MCH-0234567 F 02-MAY-1951 Haagse_Harry")
 
 
-@pytest.fixture()
+@pytest.fixture
 def recording():
     return Recording._from_str(
         "Startdate 02-MAR-2002 EMG561 BK/JOP Sony. MNC R Median Nerve."
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def edf(patient, recording):
     return Edf([EdfSignal(np.arange(10), 1)], patient=patient, recording=recording)
 

tests/test_edf_signal.py

@@ -62,7 +62,7 @@ def sine(duration, f, fs):
     return np.sin(2 * np.pi * f * t)
 
 
-@pytest.fixture()
+@pytest.fixture
 def dummy_edf_signal() -> EdfSignal:
     data = sine(5, 2, 128)
     return EdfSignal(data, 128)