Releases: thegenemyers/DALIGNER
Releases · thegenemyers/DALIGNER
Release 1 by user request
Interactive version & alignment improvements DB.[ch], QV.[ch], and align.[ch] can now be compiled in an interactive version by setting the defined constant INTERACTIVE in DB.h. Rather than printing an error message to stderr and exiting with code 1, the interactive version of the routines place an error message in a buffer EPLACE and return an error code to the caller. The aligner used O(N+M) space where N and M are the lengths of the two “reads” being compared. Now a fixed amount of memory is used so that one can compare for example 2 chromosomes against each other without exceeding memory. The daligner filter has been upgraded so that when comparing two very large sequences (say entire chromosomes), it is guaranteed to explore and report all independent alignments paths in the underlying edit graph.