FAIRSPC-87: added workflow to Build and deploy docs to Github Pages a…

…nd fixed table in doc

.github/workflows/build_and_deploy_docs.yaml

@@ -1,13 +1,10 @@
-# This workflow is triggered on any PR's changes
-
 name: Build and deploy docs to Github Pages
 
 on:
   push:
     branches:
       - bugfix/FAIRSPC-87
 
-
 jobs:
   build-saturn:
     runs-on: ubuntu-latest
@@ -25,15 +22,73 @@ jobs:
         with:
           ruby-version: '2.7'
 
-      - name: Install Asciidoctor
+      - name: Install Asciidoctor to build docs
         run: |
           gem install asciidoctor
           gem install asciidoctor-pdf
           gem install rouge
 
-      - name: Run Build Docs script
-        run: ./docs/build.sh
+      - name: Build Docs - Collect needed files
+        run: |
+          set -e
+          PROJECT_FILES=(
+            "projects/saturn/src/main/resources/log4j2.properties"
+            "projects/saturn/src/main/resources/system-vocabulary.ttl"
+            "projects/saturn/taxonomies.ttl"
+            "projects/saturn/views.yaml"
+            "projects/saturn/vocabulary.ttl"
+          )
+          BUILD_DIR=./docs/build
+          version=$(cat VERSION)
+          
+          mkdir -p $BUILD_DIR/docs
+          cp ./README.adoc $BUILD_DIR
+          sed -i -e "s/VERSION/${version}/" $BUILD_DIR/README.adoc
+          cp -r ./docs/images $BUILD_DIR/docs/
+          for f in ${PROJECT_FILES[*]}; do
+          mkdir -p "$BUILD_DIR/$(dirname "$f")"
+          cp "$f" "$BUILD_DIR/"$(dirname "$f")""
+          done
 
-      - name: Run Deploy Docs script
-        run: ./docs/deploy.sh
+      - name: Build Docs - Generate PDF and HTML
+        run: |
+          set -e
+          BUILD_DIR=./docs/build
+          asciidoctor-pdf -a pdf-theme=./docs/pdf-theme.yml -o $BUILD_DIR/Fairspace.pdf $BUILD_DIR/README.adoc || {
+            echo "Error building PDF"
+            popd
+            exit 1
+          }
+          asciidoctor -a toc=left -D $BUILD_DIR/ -o index.html $BUILD_DIR/README.adoc || {
+            echo "Error building site"
+            popd
+            exit 1
+          }
+          rm $BUILD_DIR/README.adoc
 
+      - name: Deploy Docs (push to Github Pages, will be deployed automatically)
+        env:
+          CI_SERVICE_ACCOUNT_USER: ${{ secrets.CI_SERVICE_ACCOUNT_USER }}
+          CI_SERVICE_ACCOUNT_PASSWORD: ${{ secrets.FNS_PAT }}
+          DOCUMENTATION_REPO: ${{ vars.DOCUMENTATION_REPO }}
+        run: |
+          set -e
+          DOCS_REPO="https://${CI_SERVICE_ACCOUNT_USER}:${CI_SERVICE_ACCOUNT_PASSWORD}@github.com/thehyve/${DOCUMENTATION_REPO}"
+          echo "Cloning documentation repository ${DOCUMENTATION_REPO} ..."
+          git clone --branch main "${DOCS_REPO}" fairspace-docs
+          
+          DOCS_DIR=$(pwd)/fairspace-docs
+          echo "Copying documentation to ${DOCS_DIR} ..."
+          cp -r ./docs/build/* "${DOCS_DIR}/"
+          cd "${DOCS_DIR}"
+          
+          if [ ! "$(git status -s)" == "" ]; then
+            echo "Committing and pushing changes to ${DOCUMENTATION_REPO} ..."
+            git config  --global user.email "${CI_SERVICE_ACCOUNT_USER}@thehyve.nl"
+            git config  --global user.name "${CI_SERVICE_ACCOUNT_USER}"
+            git add .
+            git commit -a -m "Update documentation"
+            git push "${DOCS_REPO}" main
+          else
+            echo "Documentation unchanged."
+          fi