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Add new metrics #17

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Add new metrics #17

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Commits on Apr 16, 2024

  1. retrain classifiers

    @chelseabright96
    chelseabright96 committed Apr 16, 2024
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  2. Merge branch 'processing' into processing_minify_scanvi

    @chelseabright96
    chelseabright96 committed Apr 16, 2024
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Commits on Apr 19, 2024

  1. add ratio and add all query obs to result

    @chelseabright96
    chelseabright96 committed Apr 19, 2024
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  2. Merge branch 'processing' of github.com:theislab/archmap_data into pr… 

    …ocessing
    @chelseabright96
    chelseabright96 committed Apr 19, 2024
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Commits on Apr 20, 2024

  1. change webhook

    @chelseabright96
    chelseabright96 committed Apr 20, 2024
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  2. fix webhook call

    @chelseabright96
    chelseabright96 committed Apr 20, 2024
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  3. change to inner join

    @chelseabright96
    chelseabright96 committed Apr 20, 2024
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  4. add webhook

    @chelseabright96
    chelseabright96 committed Apr 20, 2024
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Commits on Apr 21, 2024

  1. move call to backend

    @chelseabright96
    chelseabright96 committed Apr 21, 2024
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  2. fix error

    @chelseabright96
    chelseabright96 committed Apr 21, 2024
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Commits on May 9, 2024

  1. add presence score and other metrics

    @chelseabright96
    chelseabright96 committed May 9, 2024
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  2. make max epochs standard

    @chelseabright96
    chelseabright96 committed May 9, 2024
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  3. revert renaming

    @chelseabright96
    chelseabright96 authored May 9, 2024
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Commits on May 11, 2024

  1. uncomment notify backend

    @chelseabright96
    chelseabright96 committed May 11, 2024
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  2. uncomment notify backend

    @chelseabright96
    chelseabright96 authored May 11, 2024
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Commits on May 12, 2024

  1. notify backend metrics

    @chelseabright96
    chelseabright96 committed May 12, 2024
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  2. Merge branch 'processing_minify_scanvi' of github.com:theislab/archma… 

    …p_data into processing
    @chelseabright96
    chelseabright96 committed May 12, 2024
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Commits on May 14, 2024

  1. add webhook for metrics

    @chelseabright96
    chelseabright96 authored May 14, 2024
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  2. add webhook_metrics parameter

    @chelseabright96
    chelseabright96 authored May 14, 2024
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  3. round metrics

    @chelseabright96
    chelseabright96 committed May 14, 2024
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  4. Merge branch 'processing_minify_scanvi' of github.com:theislab/archma… 

    …p_data into processing
    @chelseabright96
    chelseabright96 committed May 14, 2024
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Commits on May 16, 2024

  1. fix spoli classifier error

    @chelseabright96
    chelseabright96 committed May 16, 2024
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Commits on May 18, 2024

  1. add stress score

    @chelseabright96
    chelseabright96 committed May 18, 2024
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Commits on May 21, 2024

  1. change stress score

    @chelseabright96
    chelseabright96 committed May 21, 2024
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Commits on May 23, 2024

  1. fix cluster pres score

    @chelseabright96
    chelseabright96 committed May 23, 2024
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Commits on Jun 1, 2024

  1. add distributed training to scvi models and use speed improvement bra… 

    …nch scpoli
    @chelseabright96
    chelseabright96 committed Jun 1, 2024
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Commits on Jun 2, 2024

  1. change number of devices

    @chelseabright96
    chelseabright96 authored Jun 2, 2024
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  2. change to absolute path

    @chelseabright96
    chelseabright96 committed Jun 2, 2024
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  3. Merge branch 'distributed_training' of github.com:theislab/archmap_da… 

    …ta into distributed_training
    @chelseabright96
    chelseabright96 committed Jun 2, 2024
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  4. change number of devices

    @chelseabright96
    chelseabright96 committed Jun 2, 2024
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Commits on Jun 3, 2024

  1. add X back for cxg

    @chelseabright96
    chelseabright96 committed Jun 3, 2024
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Commits on Jun 4, 2024

  1. remove threading

    @chelseabright96
    chelseabright96 committed Jun 4, 2024
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  2. update get keys function

    @chelseabright96
    chelseabright96 committed Jun 4, 2024
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  3. Merge branch 'distributed_training' into processing

    @chelseabright96
    chelseabright96 committed Jun 4, 2024
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  4. remove hardcoding of get_keys

    @chelseabright96
    chelseabright96 committed Jun 4, 2024
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  5. fix unknown key issue

    @chelseabright96
    chelseabright96 committed Jun 4, 2024
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Commits on Jun 6, 2024

  1. change lr fetal brain

    @chelseabright96
    chelseabright96 committed Jun 6, 2024
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  2. uncomment

    @chelseabright96
    chelseabright96 committed Jun 6, 2024
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Commits on Jun 9, 2024

  1. increase lr for fetal brain

    @chelseabright96
    chelseabright96 committed Jun 9, 2024
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Commits on Jun 17, 2024

  1. speed up metric calculations

    @chelseabright96
    chelseabright96 committed Jun 17, 2024
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  2. change max_epochs for fetal brain

    @chelseabright96
    chelseabright96 committed Jun 17, 2024
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Commits on Jun 18, 2024

  1. fix output error

    @chelseabright96
    chelseabright96 committed Jun 18, 2024
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  2. move notify backend metrics

    @chelseabright96
    chelseabright96 committed Jun 18, 2024
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Commits on Jun 19, 2024

  1. fix bug percent unknown

    @chelseabright96
    chelseabright96 committed Jun 19, 2024
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Commits on Jun 20, 2024

  1. increase fetal brain epochs

    @chelseabright96
    chelseabright96 committed Jun 20, 2024
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  2. add cell_type_key_list

    @chelseabright96
    chelseabright96 committed Jun 20, 2024
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  3. fix bug

    @chelseabright96
    chelseabright96 committed Jun 20, 2024
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  4. fix bug

    @chelseabright96
    chelseabright96 committed Jun 20, 2024
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Commits on Jun 21, 2024

  1. add cell type key

    @chelseabright96
    chelseabright96 committed Jun 21, 2024
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  2. fix duplicate bug

    @chelseabright96
    chelseabright96 authored Jun 21, 2024
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Commits on Jun 22, 2024

  1. add scanvi pred to ref

    @chelseabright96
    chelseabright96 authored Jun 22, 2024
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  2. add classifiers for cell type list

    @chelseabright96
    chelseabright96 committed Jun 22, 2024
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Commits on Jun 25, 2024

  1. add multi label classification and pretrain uncert

    @chelseabright96
    chelseabright96 committed Jun 25, 2024
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  2. print model id

    @chelseabright96
    chelseabright96 committed Jun 25, 2024
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  3. fix bug

    @chelseabright96
    chelseabright96 committed Jun 25, 2024
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  4. fix bug

    @chelseabright96
    chelseabright96 committed Jun 25, 2024
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  5. uncomment

    @chelseabright96
    chelseabright96 committed Jun 25, 2024
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Commits on Jun 27, 2024

  1. change batch key

    @chelseabright96
    chelseabright96 committed Jun 27, 2024
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  2. fix batch column

    @chelseabright96
    chelseabright96 committed Jun 27, 2024
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  3. fix batch key issue

    @chelseabright96
    chelseabright96 committed Jun 27, 2024
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  4. add hnoca extended name

    @chelseabright96
    chelseabright96 committed Jun 27, 2024
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Commits on Jun 28, 2024

  1. Merge branch 'pretrain' into processing

    @chelseabright96
    chelseabright96 committed Jun 28, 2024
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  2. change cell type key hnoca extended

    @chelseabright96
    chelseabright96 committed Jun 28, 2024
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Commits on Jul 1, 2024

  1. fix cell type key bug

    @chelseabright96
    chelseabright96 committed Jul 1, 2024
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  2. fix bug

    @chelseabright96
    chelseabright96 committed Jul 1, 2024
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  3. fix batch error

    @chelseabright96
    chelseabright96 committed Jul 1, 2024
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  4. fix hnoca issue

    @chelseabright96
    chelseabright96 committed Jul 1, 2024
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Commits on Jul 4, 2024

  1. downsample pbmc for download

    @chelseabright96
    chelseabright96 committed Jul 4, 2024
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Commits on Jul 15, 2024

  1. add finer cell types hlca

    @chelseabright96
    chelseabright96 committed Jul 15, 2024
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  2. add ann_level_5

    @chelseabright96
    chelseabright96 committed Jul 15, 2024
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