[pre-commit.ci] auto fixes from pre-commit.com hooks

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theislab · Dec 13, 2024 · 2108681 · 2108681
1 parent 76f0f0c
commit 2108681
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Showing 3 changed files with 12 additions and 4 deletions.
diff --git a/ehrapy/plot/_survival_analysis.py b/ehrapy/plot/_survival_analysis.py
@@ -370,7 +370,13 @@ def cox_ph_forestplot(
                 tval.append(
                     [
                         coxph_summary[auc_col][i],
-                        ("(" + str(coxph_summary["coef lower 95%"][i]) + ", " + str(coxph_summary["coef upper 95%"][i]) + ")"),
+                        (
+                            "("
+                            + str(coxph_summary["coef lower 95%"][i])
+                            + ", "
+                            + str(coxph_summary["coef upper 95%"][i])
+                            + ")"
+                        ),
                     ]
                 )
             ytick.append(i)
@@ -401,7 +407,9 @@ def cox_ph_forestplot(
         linewidth=0,
         elinewidth=1,
     )
-    plot.scatter(coxph_summary[auc_col], coxph_summary.index, c=color, s=(size * 25), marker=marker, zorder=3, edgecolors="None")
+    plot.scatter(
+        coxph_summary[auc_col], coxph_summary.index, c=color, s=(size * 25), marker=marker, zorder=3, edgecolors="None"
+    )
     plot.xaxis.set_ticks_position("bottom")
     plot.yaxis.set_ticks_position("left")
     plot.get_xaxis().set_major_formatter(ticker.ScalarFormatter())

diff --git a/tests/plot/test_catplot.py b/tests/plot/test_catplot.py
@@ -14,4 +14,3 @@ def test_catplot_vanilla(adata_mini, check_same_image):
         base_path=f"{_TEST_IMAGE_PATH}/catplot_vanilla",
         tol=2e-1,
     )
-
diff --git a/tests/plot/test_survival_analysis.py b/tests/plot/test_survival_analysis.py
@@ -5,6 +5,7 @@
 CURRENT_DIR = Path(__file__).parent
 _TEST_IMAGE_PATH = f"{CURRENT_DIR}/_images"
 
+
 def test_coxph_forestplot(mimic_2, check_same_image):
     adata_subset = mimic_2[:, ["mort_day_censored", "censor_flg", "gender_num", "afib_flg", "day_icu_intime_num"]]
     coxph = ep.tl.cox_ph(adata_subset, duration_col="mort_day_censored", event_col="censor_flg")
@@ -14,4 +15,4 @@ def test_coxph_forestplot(mimic_2, check_same_image):
         fig=fig,
         base_path=f"{_TEST_IMAGE_PATH}/coxph_forestplot",
         tol=2e-1,
-    )
+    )
Original file line number	Diff line number	Diff line change
Expand Up		@@ -14,4 +14,3 @@ def test_catplot_vanilla(adata_mini, check_same_image):
		base_path=f"{_TEST_IMAGE_PATH}/catplot_vanilla",
		tol=2e-1,
		)