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johannesostner committed Nov 25, 2021
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# scCODA - Single-cell differential composition analysis
scCODA allows for identification of compositional changes in high-throughput sequencing count data, especially cell compositions from scRNA-seq.
It also provides a framework for integration of cell-type annotated data directly from [scanpy](https://scanpy.readthedocs.io/en/stable/) and other sources.
Aside from the scCODA model (Büttner, Ostner *et al* (2020)), the package also allows the easy application of other differential testing methods.
Aside from the scCODA model (Büttner, Ostner *et al* (2021)), the package also allows the easy application of other differential testing methods.

![scCODA](.github/Figures/Figure1.png)

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