This repository contains supplementary code to reproduce the analyses presented in the single-cell integration benchmarking paper. For other parts of the scIB project see these repositories:
- scIB package
- scIB pipeline
- Data used in the study
Some supplementary results can be viewed on the results website at https://theislab.github.io/scib-reproducibility.
data/- Data files with benchmarking results used to create figures and the results websitedocs/- The rendered results websitenotebooks/- Jupyter notebooks used for preparing evaluation datasets and metricsscripts/- Additional analysis codevisualization/- Code for generating figures and visualizationswebsite/- Code for generating the results website