Remove warning

Former-commit-id: 4c16472
theosanderson · Apr 24, 2022 · c6c2588 · c6c2588
1 parent a187161
commit c6c2588
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/taxoniumtools/src/taxoniumtools/usher_to_taxonium.py b/taxoniumtools/src/taxoniumtools/usher_to_taxonium.py
@@ -41,7 +41,12 @@ def main():
 
  #only load these cols:
  print("Loading metadata file..")
+ #Disable warnings because of DTypeWarning in pandas
+ import warnings 
+ warnings.filterwarnings("ignore")
  metadata = pd.read_csv(args.metadata, sep="\t", usecols=cols_of_interest)
+ # Enable again
+ warnings.filterwarnings("default")
  metadata.set_index("strain", inplace=True)
  # convert metadata to dict of rows