Update ushertools.py

theosanderson · Jul 14, 2023 · ce32515 · ce32515
1 parent b261cb1
commit ce32515
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/taxoniumtools/src/taxoniumtools/ushertools.py b/taxoniumtools/src/taxoniumtools/ushertools.py
@@ -105,7 +105,7 @@ def get_mutations(past_nuc_muts_dict,
 
  # For most of this function we ignore strand - so for negative strand we
  # are actually collecting the reverse complement of the codon
- initial_codon = [seq[x] for x in gene_codon.positions]
+ initial_codon = [seq[gene_codon.positions[x]] for x in range(3)]
 
  relevant_past_muts = [(x, past_nuc_muts_dict[x])
  for x in gene_codon.positions