Merge pull request #505 from theosanderson/theosanderson-patch-45

Fix calculation of past mutations
theosanderson · Jul 29, 2023 · da2400a · da2400a · vercel · Jul 29, 2023
2 parents 1405539 + 0dab79f
commit da2400a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/taxoniumtools/src/taxoniumtools/ushertools.py b/taxoniumtools/src/taxoniumtools/ushertools.py
@@ -115,7 +115,7 @@ def get_mutations(past_nuc_muts_dict,
 
  initial_codon = [seq[gene_codon.positions[x]] for x in range(3)]
 
- relevant_past_muts = [(x, past_nuc_muts_dict[x])
+ relevant_past_muts = [(gene_codon.positions[x], past_nuc_muts_dict[x])
  for x in gene_codon.positions
  if x in past_nuc_muts_dict]
  flipped_dict = {