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Update Readme #2

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32 changes: 32 additions & 0 deletions fourmarker/Readme
Original file line number Diff line number Diff line change
Expand Up @@ -9,3 +9,35 @@ hyperintensity, and fractional anisotropy.
Note the final line of stanfit.R, which is save the result to disk. The fit can
take a long while to run (over a day). A later program will read this in to
produce tables and graphs; usually many times as a paper is refined.

simdata.rds is a stacked dataset with multiple observations per person, per
outcome. The number of measurements will vary from person to person. For
example, one person might have two outcomes measured twice each while another
person all four outcomes measured three times each. This dataset has 9
variables:

id unique subject identifier

y outcome value

outcome a number from 1 to 4 where
1=log of Amyloid PET SUVR
2=log of tau PET SUVR
3=WMH%
4=1 - FA in the GCC

age age at measurement in years

male male sex
1=male, 0=female

apoepos APOE 𝜀4 carrier
1=carrier, 0=not carrier or unknown

apoemiss missing/unknown APOE genotype
1=unknown, 0=carrier or not carrier

educ years of education

adrc referred to ADRC
1=referred, 0=not referred