Add option to enable following symlinks

[Darkemon]

Could you add an option to the xml config to set flag:

$scanner->setFlag(\FilesystemIterator::FOLLOW_SYMLINKS);

in Factory.php?

[theseer]

Probably. Not sure of the side effects though as that will potentially affect the path generation for the files since phpDox uses realpath for various things...

Has to be researched.