This project is continued here.

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Introduction

This tool offers a way to estimate transcript abundance without the use of reference databases for metatranscriptome data.

The Model

We assume that all reads coming from a transcript are uniformly distributed along the transcript (although it is not true in reality)

Dependencies

Berkeley DB, bsddb3, Biopython, HTSeq, and SciPy need to be already installed.

License

This tool for de novo metatranscriptome analysis is released under GPLv3.

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Got any questions, or just interested in this project?

Please contact me (Tianyang Li) at tmy1018@gmail.com.